AT1G53345.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.923 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:19902561..19903538 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 36682.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||
| Length | 325 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLGVKKMAV LYHYPCHDGV FAALAAHLYF SAKSIPSLFF PNTVYSPITI NQLPLQDISH LYLFDFTGPP GFVHQVSPKV DNVVILDHHK TAIDSLGDVS 101: LTCKNVTSVL DIERSGATIA FDYFTQKLVE ESRGSCKEMN DFKRMRRVFE YIEDADIWKW ELPESKAFNS GILDLKIEYD FNKNQSLFDQ LLSLDHESVI 201: NRGKQSLSKK HKLIHEVLEQ SYEIVLGGDE EFGRCLAVNA DEITELRSEL GNQLAEKSKN LSLRGVGAVV YRVPELGDEN KLKISLRSVA EEDTTPVSQR 301: FGGGGHKNAS SFLLNSMEFE QWKVK |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)