suba logo
AT1G53060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.885
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Legume lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT1G53080.1); Has 1853 Blast hits to 1833 proteins in 123 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-116-MONOMEREMBL:AC022520EMBL:CP002684EnsemblPlants:AT1G53060
EnsemblPlants:AT1G53060.1entrez:841740Gene3D:2.60.120.200GeneID:841740
Genevisible:Q9LNN1GO:GO:0030246Gramene:AT1G53060.1hmmpanther:PTHR32401
hmmpanther:PTHR32401:SF2HOGENOM:HOG000153030InParanoid:Q9LNN1InterPro:IPR001220
InterPro:IPR013320InterPro:IPR016363KEGG:ath:AT1G53060OMA:RAWIEYE
PaxDb:Q9LNN1Pfam:PF00139Pfam:Q9LNN1PhylomeDB:Q9LNN1
PIR:B96571PIRSF:PIRSF002690PRIDE:Q9LNN1PRO:PR:Q9LNN1
ProteinModelPortal:Q9LNN1Proteomes:UP000006548RefSeq:NP_175714.1SMR:Q9LNN1
SUPFAM:SSF49899TAIR:AT1G53060UniGene:At.66829UniProt:Q9LNN1
Coordinates (TAIR10) chr1:+:19776052..19776780
Molecular Weight (calculated) 27012.80 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.52
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFHGDAEYA SEPDGMSKSG AIGLSRDNVP FSHGRAIFIN PVPFKPSSTS SSVYSFKTSF YFVISPRPKN PNPGHGLAFI IVPNDRNDSA SGLGYLSLVN
101: RFSNGNPKNH LFAVEFDVFK DKSLGDINDN HIGINNNSVN STVSKKAGYW YQSKIEGKNR WLFKELKLSG NGYRAWIEYE NGKVTVTIGR SQEKPKRPLI
201: EARVDLSKVF LEKMYVGFAG SMGRGVERHE ILDWSFENSA KD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)