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AT1G49490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19020.1); Has 490010 Blast hits to 170242 proteins in 4186 species: Archae - 1140; Bacteria - 94180; Metazoa - 157463; Fungi - 74619; Plants - 89182; Viruses - 10398; Other Eukaryotes - 63028 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMQZeggNOG:ENOG410Y973EMBL:AC007504EMBL:CP002684
EnsemblPlants:AT1G49490EnsemblPlants:AT1G49490.1entrez:841373Gene3D:3.80.10.10
GeneID:841373Genevisible:Q9XIB6GO:GO:0005199GO:GO:0005576
GO:GO:0005618GO:GO:0071555Gramene:AT1G49490.1hmmpanther:PTHR32093
hmmpanther:PTHR32093:SF23HOGENOM:HOG000243909InParanoid:Q9XIB6InterPro:IPR032675
KEGG:ath:AT1G49490OMA:GEAESCVPaxDb:Q9XIB6Pfam:Q9XIB6
PIR:F96531PRIDE:Q9XIB6PRO:PR:Q9XIB6ProteinModelPortal:Q9XIB6
Proteomes:UP000006548RefSeq:NP_175372.1SMR:Q9XIB6SUPFAM:SSF52058
TAIR:AT1G49490TCDB:3.A.20.1.2UniGene:At.38224UniProt:Q9XIB6
Coordinates (TAIR10) chr1:-:18317563..18320106
Molecular Weight (calculated) 90993.80 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.74
Length 847 amino acids
Sequence (TAIR10)
(BLAST)
001: MERPFGCFFI LLLISYTVVA TFDDEPSFPE NADLTKDLEQ KCFSINKVDP NLKFENDRLK RAYIALQAWK KAIYSDPFKT TANWVGSDVC SYNGVYCAPA
101: LDDDSLTVVA GVDLNHADIA GHLPPELGLM TDLALFHINS NRFCGIIPKS LSKLALMYEF DVSNNRFVGQ FPEVSLSWPS LKFLDLRYNE FEGSLPSEIF
201: DKDLDAIFLN NNRFESVIPG TIGKSKASVV TFANNKFSGC IPKSIGNMKN LNEIVFTGNN LTGCFPNEIG LLNNVTVFDA SKNGFVGSLP STLSGLASVE
301: QLDLSHNKLT GFVVDKFCKL PNLDSFKFSY NFFNGEAESC VPGRNNGKQF DDTNNCLQNR PSQKPAKQCL PVVSRPVDCS KDKCSGGSNG GSSPSPNPPR
401: TSEPKPSKPE PVMPKPSDSS KPETPKTPEQ PSPKPQPPKH ESPKPEEPEN KHELPKQKES PKPQPSKPED SPKPEQPKPE ESPKPEQPQI PEPTKPVSPP
501: NEAQGPTPDD PYDASPVKNR RSPPPPKVED TRVPPPQPPM PSPSPPSPIY SPPPPVHSPP PPVYSSPPPP HVYSPPPPVA SPPPPSPPPP VHSPPPPPVF
601: SPPPPVFSPP PPSPVYSPPP PSHSPPPPVY SPPPPTFSPP PTHNTNQPPM GAPTPTQAPT PSSETTQVPT PSSESDQSQI LSPVQAPTPV QSSTPSSEPT
701: QVPTPSSSES YQAPNLSPVQ APTPVQAPTT SSETSQVPTP SSESNQSPSQ APTPILEPVH APTPNSKPVQ SPTPSSEPVS SPEQSEEVEA PEPTPVNPSS
801: VPSSSPSTDT SIPPPENNDD DDDGDFVLPP HIGFQYASPP PPMFQGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)