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AT2G15880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G33970.1); Has 436796 Blast hits to 106000 proteins in 3186 species: Archae - 830; Bacteria - 85977; Metazoa - 139472; Fungi - 51372; Plants - 100247; Viruses - 9779; Other Eukaryotes - 49119 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDZHeggNOG:ENOG410Y973EMBL:AC006438EMBL:CP002685
EnsemblPlants:AT2G15880EnsemblPlants:AT2G15880.1entrez:816084Gene3D:3.80.10.10
GeneID:816084Genevisible:Q9XIL9GO:GO:0005199GO:GO:0005576
GO:GO:0005618GO:GO:0071555Gramene:AT2G15880.1hmmpanther:PTHR32093
hmmpanther:PTHR32093:SF23InParanoid:Q9XIL9InterPro:IPR001611InterPro:IPR032675
KEGG:ath:AT2G15880OMA:ESEMTINPaxDb:Q9XIL9Pfam:PF00560
Pfam:Q9XIL9PhylomeDB:Q9XIL9PIR:C84534PRIDE:Q9XIL9
PRO:PR:Q9XIL9ProteinModelPortal:Q9XIL9Proteomes:UP000006548RefSeq:NP_179188.1
SMR:Q9XIL9SUPFAM:SSF52058TAIR:AT2G15880TCDB:3.A.20.1.2
UniGene:At.52756UniProt:Q9XIL9
Coordinates (TAIR10) chr2:-:6918039..6920319
Molecular Weight (calculated) 78374.20 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.52
Length 727 amino acids
Sequence (TAIR10)
(BLAST)
001: MPHIYKQPLG IFQGFVPTLT DAEVSFIAQR QLLTLPENGE LPDDIEYEVD LKVTFANHRL KRAYIALQAW KKAVYSDPFN TTGNWHGPHV CGYTGVFCAP
101: ALDDPDVAVV AGVDLNGADI AGHLPAELGL MTDVAMFHLN SNRFCGIIPK SFEKLSLMHE FDVSNNRFVG PFPSVVLSWP AVKFIDVRYN DFEGQVPPEL
201: FKKDLDAIFL NNNRFTSTIP DSLGESSASV VTFAHNKFSG CIPRSIGNMK NLNEIIFKDN SLGGCFPSEI GKLANVNVFD ASMNSFTGVL PPSFVGLTSM
301: EEFDISGNKL TGFIPENICK LPKLVNLTYA YNYFNGQGDS CVPGSQKQIA LDDTRNCLPD RPKQRSAKEC AVVISRPVDC SKDKCAGGSS QATPSKSPSP
401: VPTRPVHKPQ PPKESPQPND PYNQSPVKFR RSPPPPQQPH HHVVHSPPPA SSPPTSPPVH STPSPVHKPQ PPKESPQPND PYDQSPVKFR RSPPPPPVHS
501: PPPPSPIHSP PPPPVYSPPP PPPVYSPPPP PPVYSPPPPP PVHSPPPPVH SPPPPVHSPP PPVHSPPPPV HSPPPPVHSP PPPVYSPPPP PVHSPPPPVH
601: SPPPPVHSPP PPVYSPPPPP PVHSPPPPVF SPPPPVHSPP PPVYSPPPPV YSPPPPPVKS PPPPPVYSPP LLPPKMSSPP TQTPVNSPPP RTPSQTVEAP
701: PPSEEFIIPP FIGHQYASPP PPMFQGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)