suba logo
AT3G19020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G49490.1); Has 706755 Blast hits to 161426 proteins in 4337 species: Archae - 1652; Bacteria - 156223; Metazoa - 226544; Fungi - 92124; Plants - 115331; Viruses - 14004; Other Eukaryotes - 100877 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDZHeggNOG:ENOG410Y973EMBL:AP000735EMBL:AY091043
EMBL:CP002686EnsemblPlants:AT3G19020EnsemblPlants:AT3G19020.1entrez:821435
Gene3D:3.80.10.10GeneID:821435Genevisible:Q9LJ64GO:GO:0005199
GO:GO:0005576GO:GO:0005618GO:GO:0071555Gramene:AT3G19020.1
hmmpanther:PTHR32093hmmpanther:PTHR32093:SF23HOGENOM:HOG000243909InterPro:IPR032675
KEGG:ath:AT3G19020OMA:YDASPIKPaxDb:Q9LJ64Pfam:Q9LJ64
PRIDE:Q9LJ64PRO:PR:Q9LJ64ProteinModelPortal:Q9LJ64Proteomes:UP000006548
RefSeq:NP_188532.2SMR:Q9LJ64SUPFAM:SSF52058TAIR:AT3G19020
TCDB:3.A.20.1.2TMHMM:TMhelixUniGene:At.38466UniProt:Q9LJ64
Coordinates (TAIR10) chr3:-:6559174..6562044
Molecular Weight (calculated) 102827.00 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.85
Length 956 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRRTMEKPF GCFLLLFCFT ISIFFYSAAA LTDEEASFLT RRQLLALSEN GDLPDDIEYE VDLDLKFANN RLKRAYIALQ AWKKAFYSDP FNTAANWVGP
101: DVCSYKGVFC APALDDPSVL VVAGIDLNHA DIAGYLPPEL GLLTDVALFH VNSNRFCGVI PKSLSKLTLM YEFDVSNNRF VGPFPTVALS WPSLKFLDIR
201: YNDFEGKLPP EIFDKDLDAI FLNNNRFEST IPETIGKSTA SVVTFAHNKF SGCIPKTIGQ MKNLNEIVFI GNNLSGCLPN EIGSLNNVTV FDASSNGFVG
301: SLPSTLSGLA NVEQMDFSYN KFTGFVTDNI CKLPKLSNFT FSYNFFNGEA QSCVPGSSQE KQFDDTSNCL QNRPNQKSAK ECLPVVSRPV DCSKDKCAGG
401: GGGGSNPSPK PTPTPKAPEP KKEINPPNLE EPSKPKPEES PKPQQPSPKP ETPSHEPSNP KEPKPESPKQ ESPKTEQPKP KPESPKQESP KQEAPKPEQP
501: KPKPESPKQE SSKQEPPKPE ESPKPEPPKP EESPKPQPPK QETPKPEESP KPQPPKQETP KPEESPKPQP PKQETPKPEE SPKPQPPKQE QPPKTEAPKM
601: GSPPLESPVP NDPYDASPIK KRRPQPPSPS TEETKTTSPQ SPPVHSPPPP PPVHSPPPPV FSPPPPMHSP PPPVYSPPPP VHSPPPPPVH SPPPPVHSPP
701: PPVHSPPPPV HSPPPPVHSP PPPVHSPPPP VQSPPPPPVF SPPPPAPIYS PPPPPVHSPP PPVHSPPPPP VHSPPPPVHS PPPPVHSPPP PVHSPPPPVH
801: SPPPPSPIYS PPPPVFSPPP KPVTPLPPAT SPMANAPTPS SSESGEISTP VQAPTPDSED IEAPSDSNHS PVFKSSPAPS PDSEPEVEAP VPSSEPEVEA
901: PKQSEATPSS SPPSSNPSPD VTAPPSEDND DGDNFILPPN IGHQYASPPP PMFPGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)