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AT1G48240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : novel plant snare 12
Curator
Summary (TAIR10)
member of NPSN Gene Family
Computational
Description (TAIR10)
novel plant snare 12 (NPSN12); FUNCTIONS IN: protein transporter activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 462 Blast hits to 462 proteins in 143 species: Archae - 6; Bacteria - 52; Metazoa - 98; Fungi - 25; Plants - 137; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGS9eggNOG:ENOG410Y048EMBL:AK117322EnsemblPlants:AT1G48240
EnsemblPlants:AT1G48240.1entrez:841244ExpressionAtlas:Q541Y4GeneID:841244
GO:GO:0016021Gramene:AT1G48240.1hmmpanther:PTHR21230hmmpanther:PTHR21230:SF35
InterPro:IPR000727KEGG:ath:AT1G48240KO:K08494ncoils:Coil
OMA:KLLYFREPaxDb:Q541Y4Pfam:PF12352Pfam:Q9LNH6
Pfscan:PS50192PhylomeDB:Q541Y4PRIDE:Q541Y4PROSITE:PS50192
ProteinModelPortal:Q541Y4RefSeq:NP_175258.2SMART:SM00397SMR:Q541Y4
STRING:3702.AT1G48240.1SUPFAM:SSF58038TAIR:AT1G48240tair10-symbols:ATNPSN12
tair10-symbols:NPSN12TMHMM:TMhelixUniGene:At.38454UniProt:Q541Y4
UniProt:Q9LNH6
Coordinates (TAIR10) chr1:-:17809223..17811656
Molecular Weight (calculated) 29889.00 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.54
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MASELPMSPH LEQIHGEIRD HFRALANGFQ RLDKIKDSSR QSKQLEELAE KMRDCKRLVK EFDRELKDGE ARNSPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)