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AT2G38610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G08620.1); Has 1345 Blast hits to 1344 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 813; Fungi - 157; Plants - 284; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
BioGrid:3785eggNOG:COG5176eggNOG:KOG1588EMBL:AC005499
EMBL:AY042804EMBL:AY064682EMBL:AY065112EMBL:BT000084
EMBL:CP002685EnsemblPlants:AT2G38610EnsemblPlants:AT2G38610.1EnsemblPlants:AT2G38610.2
entrez:818443Gene3D:3.30.1370.10GeneID:818443Genevisible:Q9ZVI3
GO:GO:0003723GO:GO:0005634GO:GO:0005829Gramene:AT2G38610.1
Gramene:AT2G38610.2hmmpanther:PTHR11208hmmpanther:PTHR11208:SF59HOGENOM:HOG000238548
InParanoid:Q9ZVI3IntAct:Q9ZVI3InterPro:IPR004087InterPro:IPR004088
InterPro:IPR032377iPTMnet:Q9ZVI3KEGG:ath:AT2G38610KO:K14945
OMA:QQERLCGPaxDb:Q9ZVI3Pfam:PF00013Pfam:PF16544
Pfam:Q9ZVI3PhylomeDB:Q9ZVI3PIR:B84807PRIDE:Q9ZVI3
PRO:PR:Q9ZVI3ProteinModelPortal:Q9ZVI3Proteomes:UP000006548RefSeq:NP_181395.1
RefSeq:NP_850296.1SMART:SM00322SMR:Q9ZVI3STRING:3702.AT2G38610.1
SUPFAM:SSF54791TAIR:AT2G38610UniGene:At.23456UniProt:Q9ZVI3
Coordinates (TAIR10) chr2:-:16147552..16149638
Molecular Weight (calculated) 31722.80 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.56
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLYNNSSY FSPARAASPQ IRSTPEIDSS QYLTELLAEH QKLTPFMQVL PICSRLLNQE MFRVSGMMSN QGFGDFDRLR HRSPSPMASS NLMSNVSNTG
101: LGGWNGLSQE RLSGTPGMTM DWQGAPGSPS SYTVKRILRL EIPVDNYPNF NFVGRLLGPR GNSLKRVEAT TGCRVFIRGK GSIKDPEKED KLRGRPGYEH
201: LNEQLHILIE ADLPASIVEI RLRQAQEIIE ELLKPVDESQ DFIKRQQLRE LALLNSNNLR EESPGPSGGG SVSPFNSSGK RPKTGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)