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AT2G38480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36330.1); Has 221 Blast hits to 221 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWKHeggNOG:ENOG410YJZ0EMBL:AC004683EMBL:AC005499
EMBL:AF370348EMBL:AY062978EMBL:AY085658EMBL:CP002685
EnsemblPlants:AT2G38480EnsemblPlants:AT2G38480.1entrez:818430GeneID:818430
Genevisible:Q8LE26GO:GO:0005829GO:GO:0005886GO:GO:0016021
GO:GO:0016226GO:GO:0051536Gramene:AT2G38480.1hmmpanther:PTHR11615
hmmpanther:PTHR11615:SF144HOGENOM:HOG000239985InParanoid:Q8LE26InterPro:IPR006702
iPTMnet:Q8LE26KEGG:ath:AT2G38480OMA:GYKLSTHPaxDb:Q8LE26
Pfam:PF04535Pfam:Q8LE26PhylomeDB:Q8LE26PIR:T02497
PRIDE:Q8LE26PRO:PR:Q8LE26ProteinModelPortal:Q8LE26Proteomes:UP000006548
RefSeq:NP_565891.1STRING:3702.AT2G38480.1TAIR:AT2G38480TCDB:9.B.56.1.2
TMHMM:TMhelixUniGene:At.13123UniGene:At.48567UniProt:Q8LE26
Coordinates (TAIR10) chr2:-:16110960..16111694
Molecular Weight (calculated) 20888.90 Da
IEP (calculated) 6.80
GRAVY (calculated) 0.12
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNPDNMKPV EATDVESAAE KTSEPTPASG TSTITQRWKR EDLIKKASPI TRGICLLFSL IAFLIMVSNK HGYGRNFNDY EEYRYVLAIS IISTLYTAWQ
101: TFAHFSKREI FDRRTSILVD FSGDQIVAYL LISAASSAIP LTNIFREGQD NIFTDSAASA ISMAIFAFIA LALSALFSGY KLSTHSFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)