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AT1G34370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.
Computational
Description (TAIR10)
sensitive to proton rhizotoxicity 1 (STOP1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G22890.1); Has 25295 Blast hits to 14002 proteins in 194 species: Archae - 0; Bacteria - 2; Metazoa - 23814; Fungi - 97; Plants - 697; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).
Protein Annotations
BioGrid:25571eggNOG:COG5048eggNOG:KOG1721EMBL:AB300236
EMBL:AB300237EMBL:AB300238EMBL:AB300239EMBL:AB300240
EMBL:AB300241EMBL:AB300242EMBL:AB300243EMBL:AB300244
EMBL:AB300245EMBL:AB300246EMBL:AB300247EMBL:AC023913
EMBL:AK227128EMBL:AY087985EMBL:CP002684EnsemblPlants:AT1G34370
EnsemblPlants:AT1G34370.1EnsemblPlants:AT1G34370.2entrez:840339ExpressionAtlas:Q9C8N5
Gene3D:3.30.160.60GeneID:840339Genevisible:Q9C8N5GO:GO:0003676
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010044GO:GO:0010447GO:GO:0046872hmmpanther:PTHR10593
hmmpanther:PTHR10593:SF27HOGENOM:HOG000238514InParanoid:Q9C8N5IntAct:Q9C8N5
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880OMA:SNANQET
PaxDb:Q9C8N5Pfam:Q9C8N5Pfscan:PS50157PhylomeDB:Q9C8N5
PIR:A86468PRIDE:Q9C8N5PRO:PR:Q9C8N5PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q9C8N5Proteomes:UP000006548RefSeq:NP_174697.1
RefSeq:NP_849746.1scanprosite:PS00028SMART:SM00355SMR:Q9C8N5
STRING:3702.AT1G34370.1SUPFAM:SSF57667TAIR:AT1G34370tair10-symbols:STOP1
UniGene:At.39746UniGene:At.64018UniGene:At.74453UniProt:Q9C8N5
Coordinates (TAIR10) chr1:+:12551002..12552501
Molecular Weight (calculated) 55209.80 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.61
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)