AT1G34260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FORMS APLOID AND BINUCLEATE CELLS 1A | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FORMS APLOID AND BINUCLEATE CELLS 1A (FAB1D); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: FORMS APLOID AND BINUCLEATE CELLS 1C (TAIR:AT1G71010.1); Has 3115 Blast hits to 2757 proteins in 368 species: Archae - 419; Bacteria - 0; Metazoa - 983; Fungi - 610; Plants - 538; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12485967..12491799 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 164767.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1456 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTPSNSLSSS ERSLSGECSV DGNSCDRGIE DECSSHSSQE DVELTKEVKV DRLERKSKSM PSDILDILDE KSKENSVENV QFLSDREDDS DDVPVWEPPE 0101: PENPEDEVDG VFADDDDDCC DGSKWNKASL LGELSDESSE KRKVYEENRR VMLEEADSKF KFIVSQLIKS AGFSIEESGY WFEIVARLCW EAASMLKPAI 0201: DGKSVDPTEY IKVKCIATGS CVDSEVFKGL VFKKHAALKH MATKYEHPRI MLVEGVLGHP ISGFSSLQSV NQDNEYLLKY VKPVVDIIEA SKPDVMLVEK 0301: SVSRDIQKTI LDKGVTLVFD MKLHRLQRIS RCIGSPILSV DSLSSQKLKH CDSFRIEKIV EEHNAAGESD KKPTKTLMFL EGCPTRLGCT ILLKGCHSER 0401: LKKVKEVVQY SFILAYHLML EASFLADRHT MFSTIFAKEA TSCVVEIENF SPSPSPRESP SEAVDIPVSN GFDEQTIQIN GEADGEKVGT WESDGDHVFS 0501: HEPYNPVIFT GFSSLSARLS KYLGFVQNPE SVPVSVDTDV STTSNLDSIR ESEEDTAEKN EDKQPLLLDP ELPVNSSSDD GDNKSQTEND IESTLESQSI 0601: LVLVSKRNAL RGIMCDQRHF SHIKFYKHFD VPLEKFLRDM FNQRNLCQTC VEFPEAHLYY YAHQNKQLTI QIKRIPVAKG LAGEAKGKIW MWSRCGKCKT 0701: KNASRKSTKR VLISTAARSL SFGKFLELSF SQQTFLNRSS SCGHSFDSDF LHFFGLGSMV AMLSYSQVAS YTVSLPPMKL ESSILIKAGW LEKEFQTVFT 0801: KGISLFEDAA GFLKRLRSQF TNSDLRYQRA RKLLSNIEEL LKHERCIFEE NIKNSFDKAK TIDDVSHRLL RLNRMRWELL LQALIWNYRL QSLVLSDRLL 0901: PSSDETKIYE QGLKTVSEAG MTRYENDNKV SDSGSNGGID TPLVEHKDIP IAGASVGDND QMAESYVPED NESQTLCSSS PDTTSPINNH FDTHLAVNVH 1001: STNGQEADKS IPVTGESLDD EVSTSNGPHI LGWDEWFWLP FEELRSKRIV DIEKEYLLKF EYVNNFTQEN LQTVNQIITE ESSRLRISLR DDDFIVSDYE 1101: DELSSLIACA LAHLNNEESK KPLSRCIHGS LQGFLDNNQD SKQTDRDVSR FSSESTNRLE TLPPPEVLVT FGSVKSVGKP KYSIVSLYAD DFRDLRKRCC 1201: SSELDYIASL SRCKPWDAKG GKSKSVFAKT LDDRFIVKEI KKTEYESFVT FATEYFKYMK DSYDLGNQTC LAKVLGIHQV TVRQPKGGGK EIRHDLMVME 1301: NLSFSRKVTR QYDLKGALHA RFTATSANGE DDVLLDQNFV NDMNKSPLYV SKTSKQNLQR AVYNDTSFLT SINVMDYSLL VGVDDENHEL VCGIIDYLRQ 1401: YTWDKQLETW VKSSLVVPKN VQPTVISPID YKTRFRKFMK THFLCVPDQW CDQGDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)