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AT1G28240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF616)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G53040.2); Has 322 Blast hits to 322 proteins in 41 species: Archae - 14; Bacteria - 34; Metazoa - 0; Fungi - 4; Plants - 225; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHIBeggNOG:ENOG410Z3U5EMBL:AC021044EMBL:CP002684
EnsemblPlants:AT1G28240EnsemblPlants:AT1G28240.1entrez:839718GeneID:839718
GO:GO:0016021GO:GO:0016757Gramene:AT1G28240.1hmmpanther:PTHR12956
hmmpanther:PTHR12956:SF19InterPro:IPR006852KEGG:ath:AT1G28240OMA:ILERHLW
Pfam:PF04765PhylomeDB:Q9FZ97PIR:E86408Proteomes:UP000006548
RefSeq:NP_174145.1TAIR:AT1G28240TMHMM:TMhelixUniGene:At.20591
UniProt:Q9FZ97
Coordinates (TAIR10) chr1:-:9868521..9871798
Molecular Weight (calculated) 65581.80 Da
IEP (calculated) 9.63
GRAVY (calculated) -0.42
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGLGVRSSS YGSLEKTGLN GVVLPIQITT TTRTKPSKMQ KDREGIVHWI CKFAGRKKVG MLLLFLISAV VFLRVLYVGK GEDSQEGQGP PSLHFNGSSG
101: VNYSNMLQTN EELNMNIGNI SFKAKEVIVF PPPPIHFLGY SLPQGHPCNS FTLPPPPADR KRTGPRPCPV CYLPVEEAVA LMPNAPSFSP VLKNLTYIYE
201: EPLNRETEFG GSDFGGYPTL KHRNDSFDIK ETMSVHCGFV KGPQPGRNTG FDIDEADLLE MKQCRGIVVA SAVFDAFDDV KAPQNISKYA EETVCFYMFV
301: DEETESILKR ERGLDGNKKV GIWRVVVVHN LPYSDGRRNG KVPKLLVHRM FPNARYSLWI DGKLELVVDP YQILERFLWR KNATFAISRH YKRFDVLVEA
401: EANKAAGKYD NASIDFQVDF YKNEGLTPYS VAKLPITSDV PEGCVILREH VPISNLFTCL WFNEVDRFTS RDQISFSTVR DKIAAKTNWT VSMFLDCERR
501: NFVVQRYHRA EQERFARQRP PVPNFPPPPP SPPPPVLISS DLPRKMSSGR ATPPRRRGRD RRSGQRGHRK ANLPVRLPDS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)