AT1G22110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural constituent of ribosome | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G77932.1); Has 4674 Blast hits to 1855 proteins in 271 species: Archae - 11; Bacteria - 643; Metazoa - 1218; Fungi - 438; Plants - 374; Viruses - 105; Other Eukaryotes - 1885 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7801625..7802473 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30995.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.21 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 282 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERASSSSDS SSSMASSSDQ SLSINSDQTS PFVTSSMLSR TSSSSSSAVG DYIGTESCFD ILSADEGNDV VSVASEPVKS RFRYGGRRRE EREARAAAAR 101: EFPPPIPLLA QTGNLLPHMP WVLKRVVTSD GRLILREEKV RHHEYFRANR SNGRLTLHLV PLDDDVFDLP QEPSHYQSDD EEDDDECDDE DECDDDDQQE 201: VEDDLDDLAD KINKDVTIND DDKGNVHGDS DDGYRKVILA AVGEETVVES GMMVGGGGSP RGKCLKSCFV GMRVHEIRPV LS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)