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AT1G11740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.882
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G62050.1); Has 1132 Blast hits to 1026 proteins in 130 species: Archae - 4; Bacteria - 26; Metazoa - 550; Fungi - 29; Plants - 425; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNMSeggNOG:KOG0522EMBL:CP002684EnsemblPlants:AT1G11740
EnsemblPlants:AT1G11740.1entrez:837718Gene3D:1.25.40.20GeneID:837718
Gramene:AT1G11740.1hmmpanther:PTHR12447hmmpanther:PTHR12447:SF7InParanoid:F4IAG4
InterPro:IPR002110InterPro:IPR020683InterPro:IPR021832KEGG:ath:AT1G11740
OMA:PLHEALCPANTHER:PTHR12447PaxDb:F4IAG4Pfam:PF11904
Pfam:PF13637Pfscan:PS50088Pfscan:PS50297PRIDE:F4IAG4
PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:F4IAG4Proteomes:UP000006548
RefSeq:NP_172639.2SMART:SM00248SUPFAM:SSF48403TAIR:AT1G11740
UniGene:At.42113UniProt:F4IAG4
Coordinates (TAIR10) chr1:-:3963317..3966824
Molecular Weight (calculated) 72460.70 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.40
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MARSSPANIP ATTIDDYAHS PVHYAVVVGD HAGLTRLVSS LPKLTDPEQI HTESDSMSQE RVAEKISTVI DRRDVPFGET PLHLAVRLGD VFAAKTISSA
101: GADITLQNAA GWNSLHEALC RRNSEITEAI LRDHHRSAWC KWRRRLPHLI AVLSRMRDFY MEISFHFESS VIPFVGKIAP SDTYKIWKRG GDLRADTSLA
201: GFDGFKIRRA NQSFLFLSDG DEFLDVSPGT LLVLNRDDKT ILNAFENAKD PISDSDIAGF CGQSSLYRPG MDVTKAKLVE ITNWRRQAKI ETVGEWKAKA
301: YDVENVSFSF KSRKVGKEQG LRLDETRRSV SEPLRPQRRE QRRRSVSLPE AAILVANSSV GRIKEKEIVK SLRPSVWLTD QFPLKTEELL PLLDILANHV
401: KAVRRMRELL TTKFPAGTFP VKLSIPVIPT VKVVMTFSKF VALPPLDEFY TPLSSPKHLL AAMEDQHDVH DDEKLDRRIS SSRPSFSTPS WLRLNINATG
501: KSSRRRLVDE EQVVDPFTIP TGYKWTSNSD NSVYILHIST YLAHPKSVIL SLVFTKKSSK NQRYIRYWDH YKMASEAPSW ADQWGTGGIG VMAAEETTDG
601: KKDVTGKKSG KTKAGINKAK IVVFIGVNWM KNLVQRKKKD STSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)