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AT1G18910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G74770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XXHFeggNOG:KOG1940EMBL:CP002684EnsemblPlants:AT1G18910
EnsemblPlants:AT1G18910.1entrez:838472Gene3D:2.20.28.10Gene3D:3.30.40.10
GeneID:838472GO:GO:0008270Gramene:AT1G18910.1hmmpanther:PTHR21319
hmmpanther:PTHR21319:SF17InParanoid:F4IDY5InterPro:IPR001841InterPro:IPR004039
InterPro:IPR008913InterPro:IPR012312InterPro:IPR013083InterPro:IPR017921
KEGG:ath:AT1G18910OMA:WIATQRIPaxDb:F4IDY5Pfam:PF01814
Pfam:PF05495Pfam:PF13639Pfam:PF14599Pfscan:PS50089
Pfscan:PS51266Pfscan:PS51270PRIDE:F4IDY5PROSITE:PS50089
PROSITE:PS51266PROSITE:PS51270ProteinModelPortal:F4IDY5Proteomes:UP000006548
RefSeq:NP_173325.2SMART:SM00184SMR:F4IDY5STRING:3702.AT1G18910.1
SUPFAM:0053828SUPFAM:0053829SUPFAM:SSF57850TAIR:AT1G18910
UniGene:At.15067UniGene:At.50934UniProt:F4IDY5
Coordinates (TAIR10) chr1:-:6532706..6537993
Molecular Weight (calculated) 144100.00 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.27
Length 1254 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGVGDPLPLP PEKNRREVNK PPDIASTSSS SASAVNNARL SDAPILLFVY FHKAFRAQLA ELQFLAGDTV RSGSDLAVEL RSKFEFLKLV YKYHSAAEDE
0101: VIFSALDTRV KNIVFNYSLE HDATDDLFTS VFHWLNVLEE EQGNRADVLR EVVLCIGTIQ SSICQHMLKE ERQVFPLMIE NFSFEEQASL VWQFICSVPV
0201: MVLEEIFPWM TSLLSPKEKS EVETCFKEVV PNELSLQLVI NSWLIDDSQS SLTALTKIMK GVQSVEVSEN MTNSQTNSSS SGVFQRFWQW SKKMSFSSPN
0301: TGHILVHGIH LWHNAIRKDL VDIQKGLCQL TFPSLSLDLN VLVVRLNFLA DVLIFYSNAF KTFFYPVFED MVDQQHSSSS KQFTIDGHVE NFKKSLDLET
0401: RAGSDNFVIT LQEKLESLIL TVAKQFSIEE TEVFPIISKN CNIEMQRQLL YRSIHFLPLG LLKCVIMWFS AQLPEDECQS IIHYLSSEDS FPNKPFAHLL
0501: LQWFRFGYSG KTPVESFWNE LSFMFKPRCS FEEELTEEAS GSFFQQSPQK LFKVSDPYSM DPPAGYMNET PYSSAMNQQI LIPGKLRPLL HLPDLFGDKT
0601: IGEHLTMDLK PIDLIFYFHK AMKKDLDYLV RGSARLATDY SFLGEFQQRF HLIKFLYQIH SDAEDEIAFP ALEAKGKLQN ISQSYSIDHE LEVEHLNKVS
0701: FLLNELAELN MLVLDHKNVK YEKLCMSLQD ICKSIHKLLS EHLHREETEL WCLFRDCFTI EEQEKIIACM LGRISGEILQ DMIPWLMESL IPDEQHAVMS
0801: LWRQATRKTM FGEWLTEWYN SHAVEEETEE ANKDPSENSD PLDVVWSYLF EGAADEYKGS ICSKPLEETE LKGIMNKPLG KAAPNNKVEF GNKEENHLEI
0901: SGSKKVCTGA DETKYKEQTD SNAQAFQMSH NTSQSGQDSR YECLLSMSQE DVEATIRRIS RDSSLDPQKK SYIIQNLLMS RWIATQRIYN LEPSILSSNR
1001: EAVPGQNPSY RDPHKLIFGC KHYKRSCKLL APCCNKLYTC IRCHDEEVDH LLDRKQITKM MCMKCMIIQP VGASCSNISC SSSMGKYYCK ICKLFDDDRE
1101: IYHCPYCNLC RLGKGLSIDY FHCMKCNACM SRLIVEHVCR EKCLEDNCPI CHEYIFTSNS PVKALPCGHV MHSTCFQEYT CSHYTCPICS KSLGDMQVYF
1201: RMLDALLAEQ KMPDEYLNQT QVILCNDCGR KGNAPYHWLY HKCSSCASYN TRLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)