AT1G18500.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : methylthioalkylmalate synthase-like 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
methylthioalkylmalate synthase-like 4 (MAML-4); FUNCTIONS IN: 2-isopropylmalate synthase activity; INVOLVED IN: leucine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (InterPro:IPR013709), Pyruvate carboxyltransferase (InterPro:IPR000891), Bacterial 2-isopropylmalate synthase (InterPro:IPR005671); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 1 (TAIR:AT1G74040.1); Has 16947 Blast hits to 16939 proteins in 2437 species: Archae - 505; Bacteria - 8907; Metazoa - 233; Fungi - 482; Plants - 265; Viruses - 0; Other Eukaryotes - 6555 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:6369347..6372861 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 68679.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 631 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSLLRNPN LYSSTTITTT SFLPTFSSKP TPISSSFRFQ PSHHRSISLR SQTLRLSCSI SDPSPLPPHT PRRPRPEYIP NRISDPNYVR VFDTTLRDGE 101: QSPGATLTSK EKLDIARQLA KLGVDIIEAG FPAASKDDFE AVKTIAETVG NTVDENGYVP VICGLSRCNK KDIERAWDAV KYAKRPRIHT FIATSDIHLE 201: YKLKKTKAEV IEIARSMVRF ARSLGCEDVE FSPEDAGRSE REYLYEILGE VIKAGATTLN IPDTVGITLP SEFGQLITDL KANTPGIENV VISTHCQNDL 301: GLSTANTLSG AHAGARQMEV TINGIGERAG NASLEEVVMA IKCRGDHVLG GLFTGIDTRH IVMTSKMVEE YTGMQTQPHK AIVGANAFAH ESGIHQDGML 401: KHKGTYEIIC PEEIGLERSN DAGIVLGKLS GRHALKDRLT ELGYQLDDEQ LSTIFWRFKT VAEQKKRVTD ADIIALVSDE VFQPEAVWKL LDIQITCGTL 501: GLSTATVKLA DADGKEHVAC SIGTGPVDSA YKAVDLIVKE PATLLEYSMN AVTEGIDAIA TTRVLIRGSN KYSSTNAITG EEVQRTFSGT GAGMDIVVSS 601: VKAYVGALNK MMDFKENSAT KIPSQKNRVA A |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)