suba logo
AT2G13440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucose-inhibited division family A protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glucose-inhibited division family A protein; FUNCTIONS IN: FAD binding; INVOLVED IN: tRNA processing, tRNA wobble uridine modification; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-inhibited division protein A-related (InterPro:IPR002218), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Glucose-inhibited division protein A (InterPro:IPR004416), Glucose-inhibited division protein A-related, conserved site (InterPro:IPR020595); Has 12829 Blast hits to 12787 proteins in 2525 species: Archae - 2; Bacteria - 6632; Metazoa - 144; Fungi - 175; Plants - 52; Viruses - 0; Other Eukaryotes - 5824 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0445eggNOG:KOG2311EMBL:AC007294EMBL:CP002685
EnsemblPlants:AT2G13440EnsemblPlants:AT2G13440.1entrez:815830Gene3D:3.50.50.60
GeneID:815830GO:GO:0002098GO:GO:0016491GO:GO:0050660
Gramene:AT2G13440.1HAMAP:MF_00129hmmpanther:PTHR11806hmmpanther:PTHR11806:SF4
HOGENOM:HOG000201060InterPro:IPR002218InterPro:IPR004416InterPro:IPR020595
InterPro:IPR023753InterPro:IPR026904KEGG:ath:AT2G13440KO:K03495
OMA:FRPGYAIPfam:PF01134Pfam:PF13932PhylomeDB:Q9SHS2
PIR:G84507PROSITE:PS01280Proteomes:UP000006548RefSeq:NP_178974.1
scanprosite:PS01280SMR:Q9SHS2STRING:3702.AT2G13440.1SUPFAM:SSF51905
TAIR:AT2G13440TIGRfam:TIGR00136TIGRFAMs:TIGR00136UniGene:At.27893
UniProt:Q9SHS2
Coordinates (TAIR10) chr2:-:5593270..5598296
Molecular Weight (calculated) 80761.40 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.40
Length 723 amino acids
Sequence (TAIR10)
(BLAST)
001: MRAAAAATAT VSLRHFRSFP TIVPSLLFSS SSSIPFHSPR LCVFLRPRQL FLNRPLAASF SSSSSGATSD STYDVIVVGA GHAGCEAALA SARLGASTLL
101: LTLNLDRIAW QPCNPAVGGP AKSQLVHEVD ALGGDIGKVA DRCYLQKRIL NVSRGPAVRS LRAQTDKREY ATEMKKIVDS TENLCIREAM VTDIIVGKND
201: NVEGVATFFG MNFYAPSVIL TTGTFMSGKI WVGKKSMPAG RAGESASQGL TENLQKLGFE TDRLKTGTPA RVDRRTIDFS NLEAQHGDEE VSWFSFDPDF
301: HIEREQMCCY LTRTTKITHQ LIRDNLHETP TYGGWVEAKG PRYCPSIEDK IVRFKDKESH QIFLEPEGRD VPEIYVQGFS TGLPENLQLP LLRSLPGLEN
401: CSMLRPAYAV EYDYLPAHQC SRSLMTKKIE GLFFSGQING TTGYEEAAAQ GIISGINAAR HADGKKHVVL ERESSYIGTL IDDLVTKDLR EPYRMLTSRS
501: EHRLLLRFDN ADSRLTPLGR ELGLIDDRRW KLYQEKQARI SEEKKRLKTV KISVAVGDLA AEVSSVSSQP VKESATLESL LKKPHIHYKL LEKHGFGNET
601: LSRMEKDCVE IDIKYEGFIV RQQNQLQQMV HQQHRRLPDD LDYYSMTTLS HEGREKLSKV RPETIGQASR VGGVSPADIT ALLITLESNR RRTQDVKRGK
701: ILEHALAESN PQWVEDREHV VNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)