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AT1G17820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative integral membrane protein conserved region (DUF2404)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative integral membrane protein conserved region (DUF2404); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Putative integral membrane protein conserved region (DUF2404) (TAIR:AT1G73200.1); Has 588 Blast hits to 406 proteins in 156 species: Archae - 0; Bacteria - 7; Metazoa - 150; Fungi - 264; Plants - 48; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z3SZeggNOG:KOG2238EMBL:AY128367EMBL:BT010354
EMBL:CP002684EnsemblPlants:AT1G17820EnsemblPlants:AT1G17820.1entrez:838360
GeneID:838360Gramene:AT1G17820.1hmmpanther:PTHR13466hmmpanther:PTHR13466:SF0
HOGENOM:HOG000083123InterPro:IPR011993KEGG:ath:AT1G17820ncoils:Coil
OMA:WTSAYISPhylomeDB:Q8L7M7Proteomes:UP000006548RefSeq:NP_173224.2
STRING:3702.AT1G17820.1SUPFAM:SSF50729TAIR:AT1G17820TMHMM:TMhelix
UniGene:At.48202UniGene:At.69974UniProt:Q8L7M7
Coordinates (TAIR10) chr1:-:6131751..6135115
Molecular Weight (calculated) 90116.20 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.52
Length 803 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSFVGFVVF LSGFFLGILA VLSAEAAGFM YLLKRLNRKR DRIESKPVSD PSIKDFNPRE SIDFCINKQG VVWILELDEG LKNWMKEKLP KEQKRKRGLL
101: EIHPLRKFAR IKDHKLILSD ADSTQSETTV SLIGCSIEAV SGSDLPTRKW AKRFPIKVES KISPALYKGN QVFYIYLETS WEKESWCKAL RLASCENQER
201: FIWYSTKLKE DFRNYVTSLN VAYPSFMKPS LGFSFETLDK GNRTDGSSSK VRLFLKKFSR KRSNREDRKT YSHHGSSSGK CFPGKNNMTD DTDVPIFSRS
301: VSHSSHISGV SHLSGVSDGD SEEKVDMDEG TLALNLLISR LFFDLKRKTG VKNSVQARIQ RLLSNMRTPS YIGELICSDV DTGNLPPHIH ATRVLPMEMS
401: GVWAFELDIE YSGDVVIDVE TRVDIREVDL QQGITDTRLQ PRSSGVVPSN FAEGVEDFEK QLVFPVETVN AGEVKNGGAN KADESKSSRG TKAAPNGVSR
501: WKSILKTIAE QVSQVPISLS IRVSSLRGTL RVHMKPPPSD QLWFGFTSMP DIEFDLASSV GEHKITNSHV AMFLINRFKT AIREAVVLPN CESLTIPWMI
601: AEKDDWVQRK AAPFMWLNQE NDHNTSHATE ARSKSDKPPT SFSCLQAEQM QRTANATQKI ISEIGTLASS SCAQSEQVQK AATAFQKQNT EAEAIMSTPL
701: SNSTTVTIEN DKSLEELKTP LLVPSSSNKQ ETNSRGSSRE VSAVQSPSRS VASSEEDDSR GKKQGRRARM LDLGKKMGEK LEEKRRHMEE KSRQIVEKMR
801: GPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)