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AT1G13820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G39220.1); Has 7432 Blast hits to 7419 proteins in 1219 species: Archae - 99; Bacteria - 5035; Metazoa - 262; Fungi - 72; Plants - 574; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0596eggNOG:KOG1454EMBL:AK229290EMBL:BT012536
EMBL:BT014841EMBL:CP002684EnsemblPlants:AT1G13820EnsemblPlants:AT1G13820.1
entrez:837943ESTHER:arath-Q6NL07Gene3D:3.40.50.1820GeneID:837943
GO:GO:0016787Gramene:AT1G13820.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF801
HOGENOM:HOG000232963InterPro:IPR000073InterPro:IPR000639InterPro:IPR029058
KEGG:ath:AT1G13820MEROPS:S33.A75OMA:HIPHLEQPfam:PF12697
PhylomeDB:Q6NL07PRINTS:PR00111PRINTS:PR00412Proteomes:UP000006548
RefSeq:NP_172837.1SMR:Q6NL07STRING:3702.AT1G13820.1SUPFAM:SSF53474
TAIR:AT1G13820UniGene:At.23770UniProt:Q6NL07
Coordinates (TAIR10) chr1:+:4735622..4737617
Molecular Weight (calculated) 37961.00 Da
IEP (calculated) 7.72
GRAVY (calculated) 0.07
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSTVTATAV SRPILKVECT IKRTFKVTAE KFPTFLPTDV EKIKDTFALK LAARIERLPV SVSFREDSIM SSCVTPLMRN ETTPVVLLHG FDSSCLEWRY
101: TYPLLEEAGL ETWAFDILGW GFSDLDKLPP CDVASKREHF YKFWKSHIKR PVVLVGPSLG AAVAIDIAVN HPEAVESLVL MDASVYAEGT GNLATLPKAA
201: AYAGVYLLKS IPLRLYVNFI CFNGISLETS WDWTKIGRLH CLYPWWEDAT VSFMTSGGYN VTSLIKKVSQ KTLILWGEDD QIISNKLAWR LHGELSNARV
301: KQISNCGHLP HVEKPAAVTK LIAEFVRETC RCKEVESIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)