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AT1G12244.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0816eggNOG:ENOG410IQD9EMBL:CP002684EnsemblPlants:AT1G12244
EnsemblPlants:AT1G12244.1entrez:3766708Gene3D:3.30.420.140GeneID:3766708
GO:GO:0003676GO:GO:0006364Gramene:AT1G12244.1HAMAP:MF_00651
hmmpanther:PTHR33317hmmpanther:PTHR33317:SF2InParanoid:F4IC62InterPro:IPR005227
InterPro:IPR006641InterPro:IPR012337iPTMnet:F4IC62KEGG:ath:AT1G12244
KO:K07447OMA:PADIDFYPaxDb:F4IC62Pfam:PF03652
PhylomeDB:F4IC62ProteinModelPortal:F4IC62Proteomes:UP000006548RefSeq:NP_001031028.1
SMART:SM00732SMR:F4IC62STRING:3702.AT1G12244.1SUPFAM:SSF53098
TAIR:AT1G12244TIGRfam:TIGR00250TIGRFAMs:TIGR00250TMHMM:TMhelix
UniGene:At.47869UniProt:F4IC62
Coordinates (TAIR10) chr1:+:4157719..4158893
Molecular Weight (calculated) 28553.30 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.19
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MERTTVILFV FFLLSVAMCS LHSFSSVAIS FRTQKYVNTS LVHRLSPIGY RNYPLPWAVT SIDEIPPNAV RRKIDRNWRG GFSLGVDLGL SRTGIAISKG
101: YTVKPLTVLK SRGQKLETRL LEIAEEEEAD EFIIGLPRSS DGKETIQSNK IRSVAGRLAI QAAERGWRVY VFDEHGTTSE ASDRMIVMGL SKSERQNRSD
201: AYAAVILLER YFSTQGLGIE IILPKSLELQ AKIKNGAPVD PDFNPENLEE YYTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)