suba logo
AT5G57170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.830
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tautomerase/MIF superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tautomerase/MIF superfamily protein; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G01650.1); Has 970 Blast hits to 970 proteins in 245 species: Archae - 0; Bacteria - 199; Metazoa - 419; Fungi - 25; Plants - 143; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122MFeggNOG:KOG1759EMBL:AB023042EMBL:AK119127
EMBL:BT004713EMBL:CP002688EnsemblPlants:AT5G57170EnsemblPlants:AT5G57170.1
entrez:835823ExpressionAtlas:Q9LU69GeneID:835823Gramene:AT5G57170.1
hmmpanther:PTHR11954hmmpanther:PTHR11954:SF20HOGENOM:HOG000112325IntAct:Q9LU69
InterPro:IPR001398InterPro:IPR014347OMA:KFYDSPRPANTHER:PTHR11954
Pfam:PF01187PhylomeDB:Q9LU69ProDom:PD004816Proteomes:UP000006548
RefSeq:NP_200527.1SMR:Q9LU69STRING:3702.AT5G57170.2SUPFAM:SSF55331
TAIR:AT5G57170UniGene:At.29347UniProt:Q9LU69
Coordinates (TAIR10) chr5:-:23162201..23163140
Molecular Weight (calculated) 12324.90 Da
IEP (calculated) 4.69
GRAVY (calculated) 0.25
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTLNLFTNI PVDAVTCSDI LKDATKAVAK IIGKPESYVM ILLNSGVPIA FAGTEEPAAY GELISIGGLG PGVNGKLSET ISEILQIKLS IDSSRFYIKF
101: YDSPRPFFGY NGSTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)