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AT1G12200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Flavin-binding monooxygenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62580.1); Has 13440 Blast hits to 12864 proteins in 1673 species: Archae - 50; Bacteria - 7104; Metazoa - 1242; Fungi - 1614; Plants - 842; Viruses - 0; Other Eukaryotes - 2588 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12200-MONOMERBioGrid:23013EC:1.8.-.-eggNOG:COG2072
eggNOG:KOG1399EMBL:AC022522EMBL:AK228087EMBL:AY091080
EMBL:AY133791EMBL:CP002684EnsemblPlants:AT1G12200EnsemblPlants:AT1G12200.1
entrez:837773Gene3D:3.50.50.60GeneID:837773Genevisible:Q9FWW9
GO:GO:0004497GO:GO:0004499GO:GO:0050660GO:GO:0050661
GO:GO:0050832GO:GO:0055114Gramene:AT1G12200.1gramene_pathway:1.1.1.-
gramene_pathway:2.1.1.-gramene_pathway:PWY-1187gramene_pathway:PWYQT-4471gramene_pathway:PWYQT-4472
gramene_pathway:PWYQT-4473gramene_pathway:PWYQT-4474gramene_pathway:PWYQT-4475hmmpanther:PTHR23023
hmmpanther:PTHR23023:SF94HOGENOM:HOG000237857InParanoid:Q9FWW9InterPro:IPR000960
InterPro:IPR020946InterPro:IPR023753KEGG:ath:AT1G12200OMA:FATRPHD
PaxDb:Q9FWW9Pfam:PF00743Pfam:Q9FWW9PhylomeDB:Q9FWW9
PIR:A86257PRIDE:Q9FWW9PRINTS:PR00370PRO:PR:Q9FWW9
ProteinModelPortal:Q9FWW9Proteomes:UP000006548Reactome:R-ATH-217271RefSeq:NP_172684.1
SMR:Q9FWW9STRING:3702.AT1G12200.1SUPFAM:SSF51905TAIR:AT1G12200
UniGene:At.42086UniProt:Q9FWW9
Coordinates (TAIR10) chr1:+:4137627..4139835
Molecular Weight (calculated) 52985.30 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.44
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSHPDPTT SRHVAVIGAG AAGLVAAREL RREGHSVVVL ERGSQIGGVW AYTSQVEPDP LSLDPTRPVV HSSLYRSLRT NIPRECMGFT DFPFATRPHD
101: GSRDPRRHPA HTEVLAYLRD FAKEFDIEEM VRFETEVVKA EQVAAEGEER GKWRVESRSS DGVVDEIYDA VVVCNGHYTE PRHALITGID SWPGKQIHSH
201: NYRVPDQFKD QVVIVIGSSA SGVDICRDIA QVAKEVHVSS RSTSPDTYEK LTGYENLWLH STIQIAREDG SVVFENGKTI YADTIMHCTG YKYYFPFLDT
301: KGEVTVDDNR VGPLYKHVFP PALAPSLSFI GLPWQITPFP MFELQSKWVA AVLSGRVSLP SQDEMMEDTK AFYDKLEASG IPKRYTHLMP DDSQFEYDNW
401: LADQCEYPRI EKWREQMFYI GFKRIYAQSS TYRDNWDDDH LIVEAYDDFV KFMSSYQELL PMLKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)