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AT4G17030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : expansin-like B1
Curator
Summary (TAIR10)
Encodes EXLB1 (expansin-like B1), a member of the expansin family.
Computational
Description (TAIR10)
expansin-like B1 (EXLB1); INVOLVED IN: sexual reproduction, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin-like A2 (TAIR:AT4G38400.1); Has 1869 Blast hits to 1866 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1858; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG96eggNOG:ENOG41115SZEMBL:AK228226EnsemblPlants:AT4G17030
EnsemblPlants:AT4G17030.1entrez:827411ExpressionAtlas:Q0WRS3Gene3D:2.40.40.10
Gene3D:2.60.40.760GeneID:827411GO:GO:0005576GO:GO:0019953
Gramene:AT4G17030.1hmmpanther:PTHR31692hmmpanther:PTHR31692:SF10InterPro:IPR005795
InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009
KEGG:ath:AT4G17030OMA:RDINNGEPaxDb:Q0WRS3Pfam:O23547
Pfam:PF01357Pfam:PF03330Pfscan:PS50842Pfscan:PS50843
PhylomeDB:Q0WRS3PRIDE:Q0WRS3PRINTS:PR00829PRINTS:PR01225
PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q0WRS3RefSeq:NP_193436.2
SMR:Q0WRS3STRING:3702.AT4G17030.1SUPFAM:SSF49590SUPFAM:SSF50685
TAIR:AT4G17030tair10-symbols:AT-EXPRtair10-symbols:ATEXLB1tair10-symbols:ATEXPR1
tair10-symbols:ATHEXP BETA 3.1tair10-symbols:EXLB1tair10-symbols:EXPRUniGene:At.33028
UniProt:O23547UniProt:Q0WRS3
Coordinates (TAIR10) chr4:-:9581817..9583181
Molecular Weight (calculated) 27935.30 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.15
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)