AT2G36950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.857 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heavy metal transport/detoxification superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G03380.1); Has 2801 Blast hits to 1963 proteins in 260 species: Archae - 0; Bacteria - 269; Metazoa - 336; Fungi - 47; Plants - 1796; Viruses - 4; Other Eukaryotes - 349 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15515216..15516754 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40359.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEVQEGPKV EQEKKPAATV VPVETTDGKP KSGGGDSAAA AAPPVAAVVS AFVYKVDMHC EGCAKKIKRM VKHFDGVKDV TADTGGNKLL VVGKIDPVKL 101: QEKLEEKTKR KVVLANPPPK VEGPVAAAVG EKKADGGDKE AAPPAPAPAA PKESVVPLKI RLHCEGCIQK IKKIILKIKG VETVAIDGAK DVVTVKGTID 201: VKELVPLLTK KLKRTVEPLV PAKKDDGAAE NKKTEAAAPD AKKEAPSAGV NEAKKEGSDG GEKKKEVGDG GEKKKEGGDG GEKKKEAGDG GEKKKDGGGV 301: PAPVAMVNKM DYYGYSAYPT APMHWQEGHV YGQSYSMTGQ NYPVGGQSYP GSGYNYASES YVPYAQPNVN APGMFSDENP NGCSVM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)