AT1G11100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 23913 Blast hits to 14415 proteins in 1657 species: Archae - 99; Bacteria - 7103; Metazoa - 5587; Fungi - 5290; Plants - 2119; Viruses - 156; Other Eukaryotes - 3559 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3703934..3709302 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135683.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1226 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSKKDSVFQS QADDFSGGFE FGADDEDFMI DIEAIYRILD ESPVSMEVSQ EIMSPVGSSV VESGEFRNTL MQSGSQATGW FPYRDLYGLG ASQSEIAEPS 0101: SFSDPENGRL GLSATCYSDY GGNVVSFPVN CEDGTVSILD DMRIESKFTP CSPTTMTTYL NNMPGNDSGI GATQNSSLMS HFSPNSSSIV DCASSEPYGH 0201: HTMDAPLSEV SPNLVPGYAF QFFPKKEELL NDLKNEFIHC QSDGASRMVF DRHVGFDNGT SERNSGPDVS SERELSLKCE IIPSVSPVCV KPYNSSDGHQ 0301: VEKELEQPDN CSSSFQENRA VHMKVKPELA LENTVYSSIP GNYSRCSDVH TVGGTTLPWS GVSNCAISYQ TDVGKEYPFI PPQTAFPGQD IDGRSFYSCF 0401: DSDDCFQNVT DPDPETSRTE SLDYLVGDED HEYIKRTCFN LSSFSSGTVE SLSSKRIPER EDDSEIHKIE SYGEFVNPHQ YLPVQRPVFS SEHSTGSQTL 0501: NNCGGLKFES NKGNMNFHAD LQDLSQHSSE ASPPDGVLAV SLLRHQRIAL SWMSQKETSG NPCFGGILAD DQGLGKTVST IALILTERST PYLPCEEDSK 0601: NGGCNQSDHS QVVFNENKVV EDSLCKMRGR PAAGTLIVCP TSLMRQWADE LRKKVTLEAH LSVLVYHGCS RTKDPHELAK YDVVITTYSL VSKRKHMDCE 0701: PVEFLSGPLA QVSWFRVVLD EAQSIKNYKT QASIACSGLH AKRRWCLSGT PIQNSIADLY SYFRFLKYDP YSSYQTFCET IKNPISSYPG EGYKTLQAIL 0801: KKVMLRRTKD TLLDGKPVIS LPPKSIELRR VDFTKEERDF YSKLECDSRD QFKEYAEAGT VKQNYVNILL MLLRLRQACG HPLLVSSLSW SSSAEMVKKL 0901: PYEKLTFLLH RLEASLAICG ICNVAPKDAV VSLCGHVFCN QCICECLTRD NNQCPLSYCK VGLEISSLFS RETLENAMLD LHKLDAPCDR TTSDPVGSGE 1001: PCENLPCGSS KIKAALDILQ SLSRPQSPAT VMNDVNQSSE NGENNQQLDK SFSLPATPAK SSVGGVVNVA GEKAIVFTQW TKMLDLLEAG LKSSGIQYRR 1101: FDGKMTVPAR DAAVQDFNTL PDVSVMIMSL KAASLGLNMV AACHVIMLDL WWNPTTEDQA IDRAHRIGQT RPVKVVRFTV KDTVEDRILA LQQKKRKMVA 1201: SAFGEHENGS RESHLSVEDL NYLFMA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)