AT1G10730.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.348 cytosol 0.313 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Clathrin adaptor complexes medium subunit family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 504; Plants - 215; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:3565463..3567779 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49227.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 428 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFTKLI ETEGDSQSND PVAYDNGVTY MFVQHSNIYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE 101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL 201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA 301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL 401: KIIEKSGYQA HPWVRYITMA GEYELRLM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)