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AT1G10520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA polymerase lambda (POLL)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA polymerase lambda (POLL); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: DNA repair, DNA replication; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), DNA-directed DNA polymerase, family X, beta-like (InterPro:IPR002008), DNA-directed DNA polymerase, family X, beta-like, N-terminal (InterPro:IPR010996), DNA polymerase lambda, fingers domain (InterPro:IPR018944), DNA polymerase family X, binding site (InterPro:IPR019843), DNA-directed DNA polymerase X (InterPro:IPR002054), BRCT (InterPro:IPR001357), DNA polymerase X (InterPro:IPR022312); Has 1887 Blast hits to 1879 proteins in 557 species: Archae - 50; Bacteria - 688; Metazoa - 533; Fungi - 209; Plants - 50; Viruses - 7; Other Eukaryotes - 350 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10520-MONOMEReggNOG:COG1796eggNOG:KOG2534EMBL:AJ289628
EMBL:CP002684EMBL:DQ446242EMBL:HQ009888EnsemblPlants:AT1G10520
EnsemblPlants:AT1G10520.1entrez:837592Gene3D:1.10.150.110Gene3D:3.30.210.10
Gene3D:3.40.50.10190GeneID:837592GO:GO:0003677GO:GO:0003887
GO:GO:0005634GO:GO:0006289GO:GO:0006302GO:GO:0006303
GO:GO:0010224Gramene:AT1G10520.1hmmpanther:PTHR11276hmmpanther:PTHR11276:SF1
HOGENOM:HOG000030669InterPro:IPR001357InterPro:IPR002008InterPro:IPR002054
InterPro:IPR010996InterPro:IPR018944InterPro:IPR019843InterPro:IPR022312
InterPro:IPR027421InterPro:IPR028207InterPro:IPR029398KEGG:00230+2.7.7.7
KEGG:00240+2.7.7.7KEGG:ath:AT1G10520KO:K03512OMA:ICGGSYR
Pfam:PF10391Pfam:PF14716Pfam:PF14791Pfam:PF14792
Pfscan:PS50172PhylomeDB:Q9FNY4PRINTS:PR00869PRINTS:PR00870
PROSITE:PS00522PROSITE:PS50172Proteomes:UP000006548Reactome:R-ATH-110362
Reactome:R-ATH-110373Reactome:R-ATH-5651801Reactome:R-ATH-73930RefSeq:NP_172522.2
scanprosite:PS00522SMART:SM00483SMR:Q9FNY4STRING:3702.AT1G10520.1
SUPFAM:SSF47802SUPFAM:SSF52113SUPFAM:SSF81301SUPFAM:SSF81585
TAIR:AT1G10520UniGene:At.10195UniProt:Q9FNY4
Coordinates (TAIR10) chr1:+:3465964..3469248
Molecular Weight (calculated) 59590.90 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.57
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKRGRNRS PSPDPEGMFA GMVVFMVEIG VQRRRLQIWK QKLVQMGAVI EEDRVTKKVT HVLAMNLEAL LHKFGKERLS HFTARLMLYQ WLEDSLTSGE
101: KANEDLYVLK IDSEEVDKPK KSLPAISGSE DQSSPQKRTR YSPDAGDFKG VESHSNTQGS PDSPTSCSVP STSASPGEGI AETPTSPQSE STSVYKPPDL
201: NRNITEIFGK LINIYRALGE DRRSFSYYKA IPVIEKFPTR IESVDQLKHL PGIGKAMRDH IQEIVTTGKL SKLEHFETDE KVRTISLFGE VWGVGPATAL
301: KLYEKGHRTL EDLKNEDSLT HAQKLGLKYF DDIKTRIPRQ EVQEMEQLLQ RVGEETLPGV NIVCGGSYRR GKATCGDLDI VVTHPDGQSH KGFLTKFVKR
401: LKEMNFLRED LIFSTHSEEG TDSGVDTYFG LCTYPGQELR RRIDFKVYPR DIYSFGLIAW TGNDVLNRRL RLLAESKGYR LDDTGLFPAT HSSSGNRGAR
501: GTASLKLSTE KQVFDFLGFP WLEPHERNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)