AT1G08960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation exchanger 11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Potassium-dependent sodium-calcium exchanger like-family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation exchanger 11 (CAX11); FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1); Has 4219 Blast hits to 2943 proteins in 815 species: Archae - 83; Bacteria - 1788; Metazoa - 1182; Fungi - 291; Plants - 224; Viruses - 0; Other Eukaryotes - 651 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2879698..2881877 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59804.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.49 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELISSSTIG NSALCLTLIS ILIFFFLTTT TIPTFPDHPL RSLLDDSQIT TNSSSIVNPK SSCVSSRSHD NGGVINYFSL HYCIFNENLF FSIPILSLLI 101: LLHFYILIKT AQTHFSTVTT KLADRLNLSP SMAAVTLLAL GNGAPDVFAS VAALRGGQYR TGFGAILSAG TFVSAFVVGF VAIYAAPFPV DAASFVRDVL 201: FYLIAALFLF YVYLSGEIFV WQAIGFVGFY IFFVGFVFWM DFGTNVEKGK SISEEEKDLL RLQDCEIAAG SLGSYKAEKE HQFSGIFRLY GTISRMWETP 301: VSVLLNLTIP KPSPSEWSRF YRSANIVFCP FALLYTCNSF VQLNHPISFL FPNTHLPLWL VVLFMTSSLA FLHFTVEKQP PKTEQLPVIV VAFIMSVFWI 401: STIAGELLNC LAALGTLLKL PPALLGLTVL AWGNSVGDLV ADVAVAKAGR PAMAMAGCFA GPMFNMLVGL GSALVMQTAN VYPDAYKLGF HVGIVIAFVF 501: LLLSLMGSLL VITWSRFRVP RFWGICLVGL YVAFTFVSLI IASVST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)