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AT1G03990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Long-chain fatty alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1); Has 3131 Blast hits to 2994 proteins in 799 species: Archae - 23; Bacteria - 2103; Metazoa - 14; Fungi - 174; Plants - 167; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G03990-MONOMEREC:1.1.3.20eggNOG:COG2303eggNOG:ENOG410IEI1
EMBL:AC003027EMBL:CP002684EnsemblPlants:AT1G03990EnsemblPlants:AT1G03990.1
entrez:839342Gene3D:3.50.50.60GeneID:839342Genevisible:Q9ZWB9
GO:GO:0016021GO:GO:0046577GO:GO:0050660Gramene:AT1G03990.1
hmmpanther:PTHR10668hmmpanther:PTHR10668:SF81InParanoid:Q9ZWB9InterPro:IPR000172
InterPro:IPR007867InterPro:IPR012400InterPro:IPR023753KEGG:ath:AT1G03990
KO:K17756OMA:GPVSYPWPaxDb:Q9ZWB9Pfam:PF00732
Pfam:PF05199Pfam:Q9ZWB9PIR:A86171PIRSF:PIRSF028937
PRIDE:Q9ZWB9PRO:PR:Q9ZWB9ProteinModelPortal:Q9ZWB9Proteomes:UP000006548
RefSeq:NP_171895.2SMR:Q9ZWB9STRING:3702.AT1G03990.1SUPFAM:SSF51905
TAIR:AT1G03990UniGene:At.51272UniProt:Q9ZWB9
Coordinates (TAIR10) chr1:+:1024847..1027616
Molecular Weight (calculated) 83868.50 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.21
Length 758 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGGRRLGKR GSPLLRWSVK QESFSHGFSK SDLQALSSIC DAIMPPVPLE SLNLEMKLKV LRNDALLSFF KSSSSESHVR PDEVAELLAT KAIPLTVLVV
101: RIVLRILTFR LGTLLLCGLV CLDKKHWPFL LKFSEMSLEK REKVLQRWNT QWYNPLARIG FMMIKAIFLF YYFTWTNENS ENPVWDAINY SVEIGENEDM
201: EQKERPLDEG IIETAKEDEM TIKQRMINKG LKVTEDRERD TYKIECDAVV VGSGCGGGVA AAILAKSGLR VVVIEKGNYF APRDYSALEG PSMFELFESN
301: SLMMTHDGRF RFMAGSTVGG GSVVNWAASL KTPDAIIEEW SVHRGISIYS SEKYKAAMGI VCKRLGVTEK IIREGFQNQI LRKGCEKLGL DVTIVPRNST
401: EKHYCGSCSY GCPTGEKRGT DSTWLVDAVN NNAVILTQCK AEKLILADND ANKREESGRR KRCLGVAASL SHQTRKKLQI NAKVTIVACG SLKTPGLLAS
501: SGLKNSNISR GLHIHPIMMA WGYFPEKNSE LEGAAHEGEI VTSLHYVHPM DSTTPNITLE TPAIGPGTFA ALTPWVSGSD MKERMAKYAR TAHIFAMVRD
601: EGVGEVKGDI VKYRLTKADE ENLTIGLKQA LRILVAAGAA EVGTYRSDGQ RMKCDGIKQK DLEAFLDTVN APPGVVSMSK HWTQSFTAHQ IGCCRMGATE
701: KEGAIDGKGE SWEAEDLYVC DASVLPTALG VNPMITVQST AYCISNRIAE LMKKRKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)