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AT4G36700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G18540.1); Has 20902 Blast hits to 8035 proteins in 808 species: Archae - 33; Bacteria - 2055; Metazoa - 8096; Fungi - 1786; Plants - 959; Viruses - 431; Other Eukaryotes - 7542 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG7KEMBL:AL161589EMBL:CP002687EMBL:Z99708
EnsemblPlants:AT4G36700EnsemblPlants:AT4G36700.1entrez:829823Gene3D:2.60.120.10
GeneID:829823GO:GO:0045735Gramene:AT4G36700.1hmmpanther:PTHR31189
hmmpanther:PTHR31189:SF7InParanoid:F4JQG6InterPro:IPR006045InterPro:IPR011051
InterPro:IPR014710KEGG:ath:AT4G36700ncoils:CoilOMA:PANIANM
PaxDb:F4JQG6Pfam:PF00190PIR:D85433PRIDE:F4JQG6
ProMEX:F4JQG6ProteinModelPortal:F4JQG6Proteomes:UP000006548RefSeq:NP_195388.2
SMART:SM00835SMR:F4JQG6STRING:3702.AT4G36700.1SUPFAM:SSF51182
TAIR:AT4G36700UniGene:At.28140UniProt:F4JQG6
Coordinates (TAIR10) chr4:-:17298443..17300337
Molecular Weight (calculated) 59088.10 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.41
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRFAVLPLS VLLLVLLFLC TESLAKSEES EEYDVAVPSC CGFSSPLLIK KDQWKPIFET KFGQISTVQI GNGCGGMGPY KIHSITLEPN TILLPLLLHS
101: DMVFFVDSGS GILNWVDEEA KSTEIRLGDV YRLRPGSVFY LQSKPVDIFL GTKLKLYAIF SNNDECLHDP CFGAYSSITD LMFGFDETIL QSAFGVPEGI
201: IELMRNRTKP PLIVSETLCT PGVANTWQLQ PRLLKLFAGS ADLVDNKKKK EKKEKKEKVK KAKTFNVFES EPDFESPYGR TITINRKDLK VLKGSMVGVS
301: MVNLTQGSMM GPHWNPWACE ISIVLKGAGM VRVLRSSISS NTSSECKNVR FKVEEGDIFA VPRLHPMAQM SFNNDSLVFV GFTTSAKNNE PQFLAGEDSA
401: LRMLDRQVLA ASLNVSSVTI DGLLGAQKEA VILECHSCAE GEIEKLKVEI ERKKIDDERK RRHDERKKEE EEAKREEEER RKREEEEEKK RWPPQQPPQE
501: EELRERQLPM EKEWEMEGEE ES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)