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AT1G02740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MRG family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), Tudor-like, plant (InterPro:IPR014002), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT4G37280.1); Has 1083 Blast hits to 947 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 790; Fungi - 163; Plants - 70; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR9FeggNOG:KOG3001EMBL:AC009525EMBL:BT023414
EMBL:CP002684EnsemblPlants:AT1G02740EnsemblPlants:AT1G02740.1entrez:839455
GeneID:839455Genevisible:Q4V3E2GO:GO:0000123GO:GO:0005634
GO:GO:0006338GO:GO:0006351GO:GO:0006355GO:GO:0043967
GO:GO:0048510GO:GO:1990188Gramene:AT1G02740.1hmmpanther:PTHR10880
hmmpanther:PTHR10880:SF33HOGENOM:HOG000190863InParanoid:Q4V3E2InterPro:IPR000953
InterPro:IPR008676InterPro:IPR014002InterPro:IPR016197InterPro:IPR025995
InterPro:IPR026541iPTMnet:Q4V3E2KEGG:ath:AT1G02740KO:K11339
ncoils:CoilOMA:LYNNERKPANTHER:PTHR10880PaxDb:Q4V3E2
PDB:4PL6PDB:4PLIPDB:4PLLPDBsum:4PL6
PDBsum:4PLIPDBsum:4PLLPfam:PF05712Pfam:PF11717
Pfam:Q4V3E2Pfscan:PS51640PhylomeDB:Q4V3E2PIR:E86157
PIRSF:PIRSF038133PRIDE:Q4V3E2PRO:PR:Q4V3E2PROSITE:PS51640
ProteinModelPortal:Q4V3E2Proteomes:UP000006548RefSeq:NP_171774.2SMART:SM00298
SMART:SM00743SMR:Q4V3E2STRING:3702.AT1G02740.1SUPFAM:SSF54160
TAIR:AT1G02740UniGene:At.42582UniProt:Q4V3E2
Coordinates (TAIR10) chr1:-:599734..602021
Molecular Weight (calculated) 37630.90 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.63
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSPNAAAET DLTTDDFIGD TRRDSGSDTE TNTDCDGEDL PLLLLPAPPG HFEEGERVLA KHSDCFYEAK VLKVEFKDNE WKYFVHYIGW NKSWDEWIRL
101: DCLLKHSDEN IEKQKEQGLK QQGIKSAMAW KVSKMKPRSP NVARGRKRKQ DSVDTEKNVL PSDNLLSFNI PPALRKQLLD DFEFVTQMQK LVQLPRSPNV
201: DGILKKYIDS QMKKHGRVTD SLEEILKGLR CYFDKALPVM LLYNNERKQY EESVSGGVSP STVYGAEHLL RLFVKLPELL VHVNMAEETL KELQDNFVDI
301: LRFLRKNQSV LFVSTYKAVE EMEKKEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)