suba logo
AT5G07410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G07410-MONOMERBRENDA:3.1.1.11EC:3.1.1.11eggNOG:COG4677
eggNOG:ENOG410IKXJEMBL:AK221986EMBL:AL163912EMBL:AY087811
EMBL:CP002688EnsemblPlants:AT5G07410EnsemblPlants:AT5G07410.1entrez:830632
Gene3D:2.160.20.10GeneID:830632Genevisible:Q9LY19GO:GO:0005618
GO:GO:0009846GO:GO:0030599GO:GO:0042545GO:GO:0045330
GO:GO:0045490GO:GO:0048046GO:GO:0090406Gramene:AT5G07410.1
gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31321hmmpanther:PTHR31321:SF23
HOGENOM:HOG000217409InParanoid:Q9LY19InterPro:IPR000070InterPro:IPR011050
InterPro:IPR012334KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G07410
OMA:DDKEANCPaxDb:Q9LY19Pfam:PF01095Pfam:Q9LY19
PhylomeDB:Q9LY19PIR:T49880PRIDE:Q9LY19PRO:PR:Q9LY19
ProteinModelPortal:Q9LY19Proteomes:UP000006548RefSeq:NP_568181.1SMR:Q9LY19
STRING:3702.AT5G07410.1SUPFAM:SSF51126TAIR:AT5G07410TMHMM:TMhelix
UniGene:At.20152UniGene:At.48355UniGene:At.67054UniPathway:UPA00545
UniProt:Q9LY19
Coordinates (TAIR10) chr5:+:2345852..2347276
Molecular Weight (calculated) 39339.30 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.10
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MRYTNVSILL GMLVIFVSPM VFADDLTPIP EGKPQVVQWF NTHVGPLAQR KGLDPALVAA EAAPRIINVN PKGGEFKTLT DAIKSVPAGN TKRVIIKMAH
101: GEYREKVTID RNKPFITLMG QPNAMPVITY DGTAAKYGTV DSASLIILSD YFMAVNIVVK NTAPAPDGKT KGAQALSMRI SGNFAAFYNC KFYGFQDTIC
201: DDTGNHFFKD CYVEGTFDFI FGSGTSMYLG TQLHVVGDGI RVIAAHAGKS AEEKSGYSFV HCKVTGTGGG IYLGRAWMSH PKVVYAYTEM TSVVNPTGWQ
301: ENKTPAHDKT VFYGEYKCSG PGSHKAKRVP FTQDIDDKEA NCFLSLGYIQ GSKWLLPPPA L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)