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AT1G61566.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 9
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 9 (RALFL9); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 8 (TAIR:AT1G61563.1); Has 62 Blast hits to 62 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJICeggNOG:ENOG41115XWEMBL:AC005850EMBL:AY087014
EMBL:BT026021EMBL:CP002684EnsemblPlants:AT1G61566EnsemblPlants:AT1G61566.1
entrez:842452GeneID:842452Genevisible:Q3ECL0GO:GO:0004871
GO:GO:0005179GO:GO:0005622GO:GO:0007267GO:GO:0019722
GO:GO:0048046Gramene:AT1G61566.1hmmpanther:PTHR34270HOGENOM:HOG000015121
InterPro:IPR008801KEGG:ath:AT1G61566OMA:ATRYITYPaxDb:Q3ECL0
Pfam:PF05498Pfam:Q3ECL0PhylomeDB:Q3ECL0PRO:PR:Q3ECL0
Proteomes:UP000006548RefSeq:NP_564779.1STRING:3702.AT1G61566.1TAIR:AT1G61566
tair10-symbols:RALFL9TMHMM:TMhelixUniGene:At.36415UniProt:Q3ECL0
Coordinates (TAIR10) chr1:-:22717265..22717492
Molecular Weight (calculated) 8260.17 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.25
Length 75 amino acids
Sequence (TAIR10)
(BLAST)
1: MGMSKSIKVI LSLALVVFLA LAATKVEATR YITYPAIDRG DHAVHCDKAH PNTCKKKEAN PYQRGCEKIN RCRGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)