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AT5G66240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.949
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 21938 Blast hits to 12469 proteins in 522 species: Archae - 46; Bacteria - 4852; Metazoa - 7701; Fungi - 4572; Plants - 2085; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT9XeggNOG:KOG1446EMBL:AB022211EMBL:AK316693EMBL:CP002688EnsemblPlants:AT5G66240EnsemblPlants:AT5G66240.1
entrez:836756ExpressionAtlas:Q9FH64Gene3D:2.130.10.10GeneID:836756Gramene:AT5G66240.1hmmpanther:PTHR19861hmmpanther:PTHR19861:SF3
HOGENOM:HOG000176477InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472Pfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9FH64PRINTS:PR00320PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_851281.1
SMART:SM00320SMR:Q9FH64STRING:3702.AT5G66240.2SUPFAM:SSF50978TAIR:AT5G66240UniGene:At.43477UniProt:Q9FH64
Coordinates (TAIR10) chr5:+:26466268..26468201
Molecular Weight (calculated) 36143.10 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.06
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEREDRVSL ELSEEIIQSM EPGAVFRDYN CRISSIDFHK TSTCMVTASD DDSIRLYDVA SATCLKTINS KKYGVDLVCF TSHPTTVIYS SRNGWDDSLR
101: LLSLHDNKYL RYFKGHHDRV VSLSLCSGGE CFISGSLDRT VLLWDQRVEK CQGLLRVQGR PAAAYDDQGL IFAIAFGGYI RMFDARMYEK GPFEIFSVGG
201: DLSEANVVKF SNDGRLMLLT TMDGFIHVLD SFRGTLLSTF SVKPVAGEST LDAAFSPEGM FVVSGSGDGS THAWGVRSGK QVHSWMGLGS EPPVIKWGPG
301: SPMFVTGSSE LAFVIPDLSK LPAYAIRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)