AT5G59290.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.735 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-glucuronic acid decarboxylase 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UDP-glucuronic acid decarboxylase 3 (UXS3); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 42743 Blast hits to 42677 proteins in 3006 species: Archae - 845; Bacteria - 24952; Metazoa - 655; Fungi - 341; Plants - 1394; Viruses - 85; Other Eukaryotes - 14471 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23915814..23917998 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40199.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 357 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFNAYSGLR SLSQAMAATS EKQNTTKPPP SPSPLRNSKF CQPNMRILIS GGAGFIGSHL VDKLMENEKN EVVVADNYFT GSKENLKKWI GHPRFELIRH 101: DVTEPLLIEV DRIYHLACPA SPIFYKYNPV KTIKTNVIGT LNMLGLAKRV GARILLTSTS EVYGDPLIHP QPESYWGNVN PIGVRSCYDE GKRVAETLMF 201: DYHRQHGIEI RIARIFNTYG PRMNIDDGRV VSNFIAQALR GEALTVQKPG TQTRSFCYVS DMVDGLIRLM EGNDTGPINI GNPGEFTMVE LAETVKELIN 301: PSIEIKMVEN TPDDPRQRKP DISKAKEVLG WEPKVKLREG LPLMEEDFRL RLNVPRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)