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AT5G57000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2CFeggNOG:ENOG410YNGGEMBL:AB024035EMBL:BT026108EMBL:CP002688EnsemblPlants:AT5G57000EnsemblPlants:AT5G57000.1
entrez:835802ExpressionAtlas:Q9LTS1GeneID:835802Gramene:AT5G57000.1hmmpanther:PTHR35277hmmpanther:PTHR35277:SF2ncoils:Coil
OMA:EKICSPWPhylomeDB:Q9LTS1Proteomes:UP000006548RefSeq:NP_200510.1TAIR:AT5G57000UniGene:At.29352UniProt:Q9LTS1
Coordinates (TAIR10) chr5:-:23063870..23065203
Molecular Weight (calculated) 21037.70 Da
IEP (calculated) 8.71
GRAVY (calculated) -1.22
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTAVNTVSG DEDRSDKKIQ GDIDESKVKA PNMFERAKEE LDAVIGAIHQ RKSSKDKMEF KSDKPEDGKK KPNMLKKARE DLKSLFLKEK PPRHLHHHHK
101: ETHGRSDDIS ENTPVDEVKA PNVLERAKEE IEAVIDTIHS KKKEKDGSGS PSRSRSLSPE KERAGFACSI GKGLEKICSP WSDDKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)