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AT5G51120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : polyadenylate-binding protein 1
Curator
Summary (TAIR10)
Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.
Computational
Description (TAIR10)
polyadenylate-binding protein 1 (PABN1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20431EMBL:AB023044EMBL:AY054186EMBL:AY057580EMBL:AY079392EMBL:AY084464EMBL:AY116673
EMBL:CP002688EnsemblPlants:AT5G51120EnsemblPlants:AT5G51120.1entrez:835186ExpressionAtlas:Q93VI4Gene3D:3.30.70.330GeneID:835186
Genevisible:Q93VI4GO:GO:0000166GO:GO:0003723GO:GO:0005737GO:GO:0006397GO:GO:0016607hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF436HOGENOM:HOG000208465InParanoid:Q93VI4IntAct:Q93VI4InterPro:IPR000504InterPro:IPR012677ncoils:Coil
Pfam:PF00076Pfam:Q93VI4Pfscan:PS50102PhylomeDB:Q93VI4PRIDE:Q93VI4PRO:PR:Q93VI4PROSITE:PS50102
ProteinModelPortal:Q93VI4Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72187RefSeq:NP_568751.1SMART:SM00360SMR:Q93VI4
SUPFAM:SSF54928TAIR:AT5G51120tair10-symbols:ATPABN1tair10-symbols:PABN1UniGene:At.24603UniProt:Q93VI4
Coordinates (TAIR10) chr5:+:20779760..20781241
Molecular Weight (calculated) 25672.90 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.92
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)