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AT5G48657.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : defense protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
defense protein-related; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT3G07195.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUSDeggNOG:ENOG41106KPEMBL:CP002688EnsemblPlants:AT5G48657
EnsemblPlants:AT5G48657.2entrez:2746202ExpressionAtlas:F4K366GeneID:2746202
Gramene:AT5G48657.2hmmpanther:PTHR33159hmmpanther:PTHR33159:SF6OMA:DWTEDAP
PaxDb:F4K366PhylomeDB:F4K366PRIDE:F4K366ProteinModelPortal:F4K366
Proteomes:UP000006548RefSeq:NP_974910.1STRING:3702.AT5G48657.1TAIR:AT5G48657
UniGene:At.21081UniProt:F4K366
Coordinates (TAIR10) chr5:-:19734120..19735516
Molecular Weight (calculated) 24970.80 Da
IEP (calculated) 10.53
GRAVY (calculated) -1.39
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRPHVPKF GDWTEDAPFT VVFEKASKSK KNMNVANPNE YPDMNPNAAQ NRNMSRPDQQ PPNHNVRPRH ERFNSRDETE FRPSPAHNER NNRVRSVPPT
101: PETYNHQTYG GGGRSMGNPT EINRRQSRDH VPARPIRNLR GQSSERVATI PPFPGTGSNM ENQSYTLIFD KVKEDRNQAR SYNGTDHSTP TRPIIDQHHQ
201: PLPSSPKGCC FPPWSRKGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)