AT5G45050.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1 (TTR1); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to virus, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G45260.1); Has 18972 Blast hits to 14972 proteins in 610 species: Archae - 6; Bacteria - 638; Metazoa - 199; Fungi - 9; Plants - 17764; Viruses - 2; Other Eukaryotes - 354 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:18177016..18181805 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 152652.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1344 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTESEQIVYI SCIEEVRYSF VSHLSKALQR KGVNDVFIDS DDSLSNESQS MVERARVSVM ILPGNRTVSL DKLVKVLDCQ KNKDQVVVPV LYGVRSSETE 0101: WLSALDSKGF SSVHHSRKEC SDSQLVKETV RDVYEKLFYM ERIGIYSKLL EIEKMINKQP LDIRCVGIWG MPGIGKTTLA KAVFDQMSGE FDAHCFIEDY 0201: TKAIQEKGVY CLLEEQFLKE NAGASGTVTK LSLLRDRLNN KRVLVVLDDV RSPLVVESFL GGFDWFGPKS LIIITSKDKS VFRLCRVNQI YEVQGLNEKE 0301: ALQLFSLCAS IDDMAEQNLH EVSMKVIKYA NGHPLALNLY GRELMGKKRP PEMEIAFLKL KECPPAIFVD AIKSSYDTLN DREKNIFLDI ACFFQGENVD 0401: YVMQLLEGCG FFPHVGIDVL VEKSLVTISE NRVRMHNLIQ DVGRQIINRE TRQTKRRSRL WEPCSIKYLL EDKEQNENEE QKTTFERAQV PEEIEGMFLD 0501: TSNLSFDIKH VAFDNMLNLR LFKIYSSNPE VHHVNNFLKG SLSSLPNVLR LLHWENYPLQ FLPQNFDPIH LVEINMPYSQ LKKLWGGTKD LEMLKTIRLC 0601: HSQQLVDIDD LLKAQNLEVV DLQGCTRLQS FPATGQLLHL RVVNLSGCTE IKSFPEIPPN IETLNLQGTG VSNLEQSDLK PLTSLMKIST SYQNPGKLSC 0701: LELNDCSRLR SLPNMVNLEL LKALDLSGCS ELETIQGFPR NLKELYLVGT AVRQVPQLPQ SLEFFNAHGC VSLKSIRLDF KKLPVHYTFS NCFDLSPQVV 0801: NDFLVQAMAN VIAKHIPRER HVTGFSQKTV QRSSRDSQQE LNKTLAFSFC APSHANQNSK LDLQPGSSSM TRLDPSWRNT LVGFAMLVQV AFSEGYCDDT 0901: DFGISCVCKW KNKEGHSHRR EINLHCWALG KAVERDHTFV FFDVNMRPDT DEGNDPDIWA DLVVFEFFPV NKQRKPLNDS CTVTRCGVRL ITAVNCNTSI 1001: ENISPVLSLD PMEVSGNEDE EVLRVRYAGL QEIYKALFLY IAGLFNDEDV GLVAPLIANI IDMDVSYGLK VLAYRSLIRV SSNGEIVMHY LLRQMGKEIL 1101: HTESKKTDKL VDNIQSSMIA TKEIEITRSK SRRKNNKEKR VVCVVDRGSR SSDLWVWRKY GQKPIKSSPY PRSYYRCASS KGCFARKQVE RSRTDPNVSV 1201: ITYISEHNHP FPTLRNTLAG STRSSSSKCS DVTTSASSTV SQDKEGPDKS HLPSSPASPP YAAMVVKEED MEQWDNMEFD VDVEEDTFIP ELFPEDTFAD 1301: MDKLEENSQT MFLSRRSSGG NMEAQGKNSS DDREVNLPSK ILNR |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)