AT5G40840.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rad21/Rec8-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Cohesion family protein SYN2 (SYN2). | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SYN2; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909); BEST Arabidopsis thaliana protein match is: sister chromatid cohesion 1 protein 4 (TAIR:AT5G16270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16359611..16362823 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76798.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 678 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLILGFWRI FMGEMLSRMK ILHLKMEVRK QSAWTCIRWK GLTWKRTFCL RFMRLSLPII MKINKNVRDT TEEASVRVVE AEPLDSNEPS RDHQNASRHR 101: EDPESDDILL EPQMSEDIRI AQEEDTVRET ICTIVQRLVD SHESSGDNLH RDGHTENLES EKTSKKTSCE EMQHDRSLPS ECGIPEAIHG IEDQPSGATR 201: INGEKEIPEM STLEKPEPVS VTGSRDLQEG VEKCRDHNEA EMADFELFHG SHKEQSETSE VNLHGSEKGF LSDMTVSKDP SSEFNATDTP VTVTPKTPSR 301: LKISEGGTSP QFSIIPTPAA KESSRVSRKR KCLIDDEVII PNKVMKEMIE DSSKLLAKRR NVPHTDCPER RTKRFANPFR SFLEPLIQYG SSDLQSLFCQ 401: PIKLKNWATT GTPKDTKIAR HKEKSSLDTV RSPGVILSSD QTENTQEIME TPQAAALAGL KVTAGNSNVV SVEMGASSTT SGTAHQTENA AETPVKPSVI 501: APETPVRTSE QTVIAPETPV VSEQVEIAPE TPVRESMSKR FFKDPGTCYK KSRPASPFTS FEEHPSVYYV ENRDLDTILM NDEQVNADER QDLQQETWSS 601: RTRNVAKFLE KTFLEQRERE EEEKVSLLQL CRGRTQKESA RLFYETLVLK TKGYVEVKQN HPYSDVFLMR VSRPQKAC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)