AT5G20250.4
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.995 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Raffinose synthase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DARK INDUCIBLE 10 (DIN10); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:6833730..6836635 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94220.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 844 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASQSCYNGI HRIKRVHPLI HSLTFHRFSS SSLPFKSHIP SSQQQLRIRS SSSLSDLGNR RHCSSTRGFQ FWSYKRSEAA SPFKTRYREN EEEEDMTIKP 101: AVRISDGNLI IKNRTILTGV PDNVITTSAS EAGPVEGVFV GAVFNKEESK HIVPIGTLRN SRFMSCFRFK LWWMAQRMGE MGRDIPYETQ FLLVESNDGS 201: HLESDGANGV ECNQKVYTVF LPLIEGSFRS CLQGNVNDEV ELCLESGDVD TKRSSFTHSL YIHAGTDPFQ TITDAIRTVK LHLNSFRQRH EKKLPGIVDY 301: FGWCTWDAFY QEVTQEGVEA GLKSLAAGGT PPKFVIIDDG WQSVERDATV EAGDEKKESP IFRLTGIKEN EKFKKKDDPN VGIKNIVKIA KEKHGLKYVY 401: VWHAITGYWG GVRPGEEYGS VMKYPNMSKG VVENDPTWKT DVMTLQGLGL VSPKKVYKFY NELHSYLADA GVDGVKVDVQ CVLETLGGGL GGRVELTRQF 501: HQALDSSVAK NFPDNGCIAC MSHNTDALYC SKQAAVIRAS DDFYPRDPVS HTIHIASVAY NSVFLGEFMQ PDWDMFHSVH PAAEYHASAR AISGGPLYVS 601: DSPGKHNFEL LRKLVLPDGS ILRARLPGRP TRDCLFADPA RDGVSLLKIW NMNKYTGVLG VYNCQGAAWS STERKNIFHQ TKTDSLTGSI RGRDVHSISE 701: ASTDPTTWNG DCAVYSQSRG ELIVMPYNVS LPVSLKIREH EIFTVSPISH LVDGVSFAPI GLVNMYNSGG AIEGLRYEAE KMKVVMEVKG CGKFGSYSSV 801: KPKRCVVESN EIAFEYDSSS GLVTFELDKM PIENKRFHLI QVEL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)