AT5G19940.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:6739693..6740747 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 26002.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.83 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||
| Length | 235 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATASSLTI ASSFSEPRTQ IHSSRRLNLP LQYSIPYKVL RSRSRRLGLV VSSVSAPNVE LRTGPDDLIS TLLSKVANSD GGVTLSPEQH KEVAQVAGEL 101: QKYCVKEPVK NPLIFGDWEV VYCSRPTSPG GGYRSVIGRL FFKTKEMIQA IDAPDIVRNK VSINAFGFLD GDVSLTGKLK ALDSEWVQVI FEPPEIKVGS 201: LEFKYGFESE VKLRITYVDE KLRKKGNNIW GPARV |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)