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AT5G14580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polyribonucleotide nucleotidyltransferase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
polyribonucleotide nucleotidyltransferase, putative; FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: mRNA catabolic process, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT3G03710.1); Has 30004 Blast hits to 26962 proteins in 2901 species: Archae - 317; Bacteria - 19794; Metazoa - 489; Fungi - 141; Plants - 452; Viruses - 0; Other Eukaryotes - 8811 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G14580-MONOMEREC:2.7.7.8eggNOG:COG1185eggNOG:KOG1067EMBL:AL163792EMBL:CP002688EMBL:Y14685
EMBL:Y14686EnsemblPlants:AT5G14580EnsemblPlants:AT5G14580.1entrez:831309Gene3D:1.10.10.400Gene3D:2.40.50.140Gene3D:3.30.1370.10
Gene3D:3.30.230.70GeneID:831309Genevisible:Q9S7G6GO:GO:0000175GO:GO:0000957GO:GO:0000963GO:GO:0003723
GO:GO:0004654GO:GO:0005739GO:GO:0006364GO:GO:0006397GO:GO:0006402GO:GO:0008033GO:GO:0090503
Gramene:AT5G14580.1HAMAP:MF_01595hmmpanther:PTHR11252hmmpanther:PTHR11252:SF3HOGENOM:HOG000218327InParanoid:Q9S7G6InterPro:IPR001247
InterPro:IPR003029InterPro:IPR004088InterPro:IPR012162InterPro:IPR012340InterPro:IPR015847InterPro:IPR015848InterPro:IPR020568
InterPro:IPR022967InterPro:IPR027408KEGG:00230+2.7.7.8KEGG:00240+2.7.7.8KEGG:ath:AT5G14580KO:K00962OMA:DEVRPIY
PANTHER:PTHR11252PaxDb:Q9S7G6Pfam:PF00575Pfam:PF01138Pfam:PF03725Pfam:PF03726Pfam:Q9S7G6
Pfscan:PS50126PhylomeDB:Q9S7G6PIR:T48631PRIDE:Q9S7G6PRO:PR:Q9S7G6PROSITE:PS50126ProteinModelPortal:Q9S7G6
Proteomes:UP000006548RefSeq:NP_196962.1SMART:SM00316SMR:Q9S7G6STRING:3702.AT5G14580.1SUPFAM:SSF50249SUPFAM:SSF54211
SUPFAM:SSF54791SUPFAM:SSF55666TAIR:AT5G14580TIGRfam:TIGR03591TIGRFAMs:TIGR03591UniGene:At.427UniProt:Q9S7G6
Coordinates (TAIR10) chr5:-:4697612..4703013
Molecular Weight (calculated) 107778.00 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.27
Length 991 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSIVNRASS ASLPNFLAWR ALGFRTICSG RLGFAPSVPD SPVSAGTKIL ESFKEEFEVG SRVVSFETGK IARFANGSVV LGMDETKVLS TVTCAKTDSP
101: RDFLPLTVDY QEKQYAQGLI PNTYMRREGA PKERELLCGR LIDRPIRPLF PTGFYHEVQI MASVLSSDGK QDPDILAANA SSAALMLSDV PWGGPIGVIR
201: IGRICGQFVV NPTMDELSSS DLNLIYACTR DKTMMIDVQS REISEKDLAA ALRLAHPEAV KYLDPQIRLA EKAGKQKKEY KLSMLSDKTL EKVADLAATR
301: IESVFTDPSY GKFERGEALD NIGKDVRKVF EEEGDQESLS ILPKAVDTVR KKVVRSRMIS DGFRVDGRHV DEVRPIYCES HYLPALHGSA LFSRGDTQVL
401: CTVTLGAPAE AQSLDSLVGP PKKRFMLHYS FPPYCTNEVG KRGGLNRREV GHGTLAEKAL LAVLPPEEAF PYTIRINSEV MSSDGSTSMA SVCGGSMALM
501: DAGIPLRAHV AGVSVGLITD VDPSSGEIKD YRIVTDILGL EDHLGDMDFK IAGTRDGVTA IQLDIKPAGI PLDIVCESLE NAREARLQIL DHMERNINSP
601: RGQDGAYSPR LATLKYSNDS LRTLIGPMGV LKRKIEVETG ARLSIDNGTL TIVAKNQDVM EKAQEQVDFI IGRELVVGGV YKGTVSSIKE YGAFVEFPGG
701: QQGLLHMSEL SHEPVSKVSD VLDIGQCITT MCIETDVRGN IKLSRKALLP KPKRKPASDA GKDPVMKESS TVYIENSSVG EIVASMPSIV TPLQKSRLSV
801: PAVVIRTAVE CNEAEKSSPV NDNDKPRRAA TSKPDRKPKS TASKLIATQK EEEALESIAP EETSAECGEI LKQDGKLKSV SPKNNSTASN LVSFSKAKKS
901: TMKENLSENK AEESASVSTR KLKIGTEMTA TVDHVRALGL VLDLGGEIRG MYIFQGDKDK FKKGDTLRVK CTSFNTKGVP VMALVDEEGE E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)