AT5G08130.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1); Has 2462 Blast hits to 2451 proteins in 182 species: Archae - 0; Bacteria - 2; Metazoa - 310; Fungi - 80; Plants - 2061; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:2606655..2608652 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45419.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMFNANERNV LDENSNSNCS SYAAASSGFT LWDESASGKK GQTRKENSVG ERVNMRADVA ATVGQWPVAE RRSQSLTNNH MSGFSSLSSS QGSVLKSQSF 101: MDMIRSAKGS SQEDDLDDEE DFIMKKESSS TSQSHRVDLR VKADVRGSPN DQKLNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVI 201: EYIQFLQEKA DKYVTSYQGW NHEPAKLLNW SNNNQQLVPE GVAFAPKLEE EKNNIPVSVL ATAQGVVIDH PTTATTSPFP LSIQSNSFFS PVIAGNPVPQ 301: FHARVASSEA VEPSPSSRSQ KEEEDEEVLE GNIRISSVYS QGLVKTLREA LENSGVDLTK ASISVEIELA KQSSSSSFKD HEVREPVSRT RNDNVKQTRK 401: PKRLKTGQ |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)