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AT5G06420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT1G01350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5152eggNOG:KOG1813EMBL:AB006700EMBL:AY087435EMBL:AY136406EMBL:BT000229EMBL:CP002688
EnsemblPlants:AT5G06420EnsemblPlants:AT5G06420.1EnsemblPlants:AT5G06420.2entrez:830530Gene3D:3.30.40.10Gene3D:4.10.1000.10GeneID:830530
Genevisible:Q9FNG6GO:GO:0003677GO:GO:0008270GO:GO:0016020Gramene:AT5G06420.1Gramene:AT5G06420.2hmmpanther:PTHR12930
HOGENOM:HOG000174759InParanoid:Q9FNG6InterPro:IPR000571InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907iPTMnet:Q9FNG6
KEGG:ath:AT5G06420KO:K13127OMA:GFGDACKPaxDb:Q9FNG6Pfam:PF00642Pfam:PF13920Pfam:Q9FNG6
Pfscan:PS50089Pfscan:PS50103PhylomeDB:Q9FNG6PRIDE:Q9FNG6PRO:PR:Q9FNG6PROSITE:PS00518PROSITE:PS50089
PROSITE:PS50103ProteinModelPortal:Q9FNG6Proteomes:UP000006548RefSeq:NP_196260.1RefSeq:NP_850780.1scanprosite:PS00518SMART:SM00184
SMART:SM00356SMR:Q9FNG6STRING:3702.AT5G06420.1SUPFAM:SSF57850SUPFAM:SSF90229TAIR:AT5G06420UniGene:At.42654
UniProt:Q9FNG6
Coordinates (TAIR10) chr5:+:1961521..1962870
Molecular Weight (calculated) 42462.20 Da
IEP (calculated) 7.13
GRAVY (calculated) -1.00
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPFVVKENI VASASSPMKK RRIDHTESAD GSAINASNSS SIGGNDTVMN MAEFGNDNSN NQESQQVCTF FKKPTKSKNI RKRTIDADEE DGDSKSESSI
101: LQNLKKVAKP DSNLYFSSGP STRTSGAPER PVFHYDSSKE IQVQNDSGAT ATLETETDFN QDARAIRERV LKKADHALKG NKKKASDEKL YKGIHGYTDH
201: KAGFRREQTI SSEKAGGSHG PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFLH DRGDYKPGWQ IEKEWEEAEK VRKRNKAMGV EDDDDEADKD
301: SDEDENALPF ACFICREPFL DPVVTKCKHY FCEHCALKHH TKNKKCFVCN QPTMGIFNAA HEIKKRMAEE RSKAEQGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)