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AT5G64520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.900
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of X-ray repair cross complementing 2 (XRCC2)
Curator
Summary (TAIR10)
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational
Description (TAIR10)
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 216 Blast hits to 214 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:21815DNASU:836573eggNOG:ENOG4112B2NeggNOG:KOG2859
EMBL:AB010076EMBL:AJ421043EMBL:AK175434EMBL:CP002688
EnsemblPlants:AT5G64520EnsemblPlants:AT5G64520.1entrez:836573ExpressionAtlas:Q682D3
Gene3D:3.40.50.300GeneID:836573Genevisible:Q682D3GO:GO:0000150
GO:GO:0000400GO:GO:0000707GO:GO:0000724GO:GO:0003690
GO:GO:0003697GO:GO:0005524GO:GO:0005657GO:GO:0006312
GO:GO:0007131GO:GO:0008094GO:GO:0010212GO:GO:0033063
GO:GO:0042148hmmpanther:PTHR22942hmmpanther:PTHR22942:SF36HOGENOM:HOG000095695
InParanoid:Q682D3InterPro:IPR020588InterPro:IPR027417iPTMnet:Q682D3
KEGG:ath:AT5G64520KO:K10879OMA:RCYDSLEPaxDb:Q682D3
Pfam:Q682D3Pfscan:PS50162PhylomeDB:Q682D3PRIDE:Q682D3
PRO:PR:Q682D3PROSITE:PS50162ProteinModelPortal:Q682D3Proteomes:UP000006548
Reactome:R-ATH-5693616RefSeq:NP_001032141.1RefSeq:NP_851268.1STRING:3702.AT5G64520.1
SUPFAM:SSF52540TAIR:AT5G64520tair10-symbols:ATXRCC2tair10-symbols:XRCC2
UniGene:At.28955UniProt:Q682D3
Coordinates (TAIR10) chr5:+:25788069..25790204
Molecular Weight (calculated) 42363.40 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.12
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDDEARSWI RGDETAKQML SRVLKDRAFL LIPPLHRVPL RAGNVVEITG ASTSAKTQIL IQAAISCILP KTWNGIHYGG LGKLVLFLDL DCRFDVLRLS
101: QMLKHRLLQA NWLGNGAWWQ LEESNVKSCK SAEEKTKTVF DEELYASCMK RFLYVRCYDS LELLSSLKTL HYRIQQQEAC GSQVGVLMID SIGAFHWTDR
201: LSSSLALETH NRKSLSLTNV VETIVQELKK LLLVHSLVVL ATKGTIYEEK YPANENNRKV SSNDHFSGNV ASKAQQPPFR EFMPSSWQAF VTHKIIIRKS
301: ADYQSLQTGQ QNLLAYSLEW LQPQLSRIDR FIVDDVRKLT TIKPFYSKLL LIYIVIPASS SHAVWYCHCL VT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)