AT5G05210.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Surfeit locus protein 6 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Surfeit locus protein 6; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 6 (InterPro:IPR007019); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 6 (TAIR:AT2G27750.1); Has 32234 Blast hits to 20830 proteins in 1371 species: Archae - 181; Bacteria - 3648; Metazoa - 13184; Fungi - 2634; Plants - 1078; Viruses - 135; Other Eukaryotes - 11374 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:1548398..1549534 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44253.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.63 | ||||||||||||||||||||||||||||||||
| Length | 378 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKKKGKHVS EMDFKTHQHT EFFDKLIELT PARFYLPDET ERKWYPGLSK AQKARAKKKT NDNLKKAKRD KLDPEKSALT TLDLLKEKIE KERLASQKQK 101: LKKKHADLRE QKLEQEKSGT ELPDDDSKKE TDNNRLNDDD SKEETDNNRQ KDDRSVTYEE LRERLHRKID ELKGGRGGSD RPRSNERRKK NLPNKRKRDT 201: VSEEKTVEEI KSADKGKGKL DVEEAAKDLT FGYVKIDDDE EHGKEKKKRR LSKARELERA MKLEAAKKDP EKGDVIAKKH SWKAATSRAA GIKVHDDPKL 301: LKQSIHKDKK RQEKNAEKWK ERIEGQQKFK VEKQQKRSGN IADRIEQNKM RKIAKREKKL LRPGFEGRKE GFINEGGN |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)