AT4G38600.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.733 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HEAT repeat ;HECT-domain (ubiquitin-transferase) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18041503..18049073 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 193464.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1794 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDTSTDSSGF RRGGRGNRGN NNDNSDKGKE KEHDVRIRER ERERDRAREQ LNMDAAAAAA RSADEDDDND SEDGNGGFMH PNMSSASSAL QGLLRKLGAG 0101: LDDLLPSSGI GSASSSHLNG RMKKILSGLR AEGEEGKQVE ALTQLCEMLS IGTEDSLSTF SVDSFVPVLV GLLNHESNPD IMLLAARALT HLCDVLPSSC 0201: AAVVHYGAVS CLVARLLTIE YMDLAEQSLQ ALKKISQEHP TACLRAGALM AVLSYLDFFS TGVQRVALST AANMCKKLPS DASDYVMEAV PLLTNLLQYH 0301: DSKVLEYASI CLTRIAEAFA PYPEKLDELC NHGLVTQAAS LISTSNSGGG QASLSVSTYT GLIRLLSTCA SGSPLGFRTL LLLGISSILK DILLGSGVSA 0401: NASVSPALSR PADQIYEIVN LANELLPPLP EGVISLPTST NALVKGSCQK KSSPSTSGKQ EDILKISPRE KLLGDQPELL QQFGLDLLPV LVQIYGSSVN 0501: GTIRHKCLSV IGKLMYFSSS EMIQSLIGDT NISSFLAGVL AWKDPQVLVP ALQVAEILME KLPETFSKVF VREGVVHAVD QLVLVGKPSH ASPTDKDNDC 0601: VPGSARSRRY RRRSSNANSD GNQSEEPKNP ASLTIGANHN SLDTPTASFM LRETVSSCAK AFKDKYFPSD GGDVDVGVTD DLLHLKNLCT KLTAGIDDHK 0701: VKGKGKSKAS GPFLGDFSAS KEEYLIGVIS EILGEISKGD GVSTFEFIGS GVVAALLNYF SCGYFSKEKI SELNLPKLRQ EGLRRFKAFL EVALPFDGNE 0801: GKVPPMTVLI QKLQNALSSL ERFPVVLSHP SRSLSGSARL SSGLSALAHP LKLRLCRASG EKTLRDYSSN IVLIDPLASL AAVEEFLWPR VQRSESALKP 0901: AAPIGNTEPG TLPSGAGVSS PSSSTPASTT RRHSSRSRSA INIGDTSKKD PVHEKGTSSS KGKGKGVMKP AQADKGPQTR SNAQKRADEE LEISPVDIDD 1001: ALVIEEDDIS DDEDDDNEDV LDDSLPMCTP DKVHDVKLAD SVDDDGLATS GRQMNPASGG TSGAAAARAS DSIDTGIGNS YGSRGALSFA AAAMAGLGAA 1101: SGRGIRGSRD LHGRTLNRSS DEPSKLIFTA AGKQLSRHLT IYQAVQRQLM LDEDDDDRFG GSDLVSSDGS RFNDIYTIMY QRPDSQVNRL SVGGASSTTP 1201: SKSTKSATTN SSVESQSHRA SLLDSILQGE LPCDLEKSNS TYNVLALLRV LEGLNQLCPR LRAQTLSDRF AEGKITSLDD LSTTAAKVPL DEFVNSKLTP 1301: KLARQIQDAL ALCSGSLPSW CYQLTRACPF LFPFQTRRQY FYSTAFGLSR ALNRLQQQQG ADGSGSTNER EMRIGRLQRQ KVRVSRNRIL DSAAKVMEMY 1401: SSQKAVLEVE YFGEVGTGLG PTLEFYTLLS HDLQKASLGM WRSSSGDKVS MQIGRDEIED GKPSAANRDI VLAPLGLFPR PWPSTADISE GGQFHKVIEY 1501: FRLLGRVMAK ALQDGRLLDV PLSTAFYKLI LGQELDLHDI VLFDAELGKT LQELRVVVAR KHYLEGVGGD NSSTISDLCL RGCRIEDLSL EFTLPGYPEY 1601: ILRSGDEIVD ITNLEEYISL VVDATVKRGV TRQIEAFRSG FNQVFDITSL QIFTPSELDY LLCGRRELWE VETLAEHIKF DHGYNAKSPA IINIMGELTA 1701: DQQRAFCQFV TGAPRLPPGG LAVLNPKLTI VRKHSSTSSA AANGAGASET ADDDLPSVMT CANYLKLPPY STKEIMYKKL LYAINEGQGS FDLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)