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AT4G37190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPM0eggNOG:KOG2530EMBL:AL161590EMBL:BT023731EMBL:BT033152EMBL:CP002687EMBL:Z99707
EnsemblPlants:AT4G37190EnsemblPlants:AT4G37190.1entrez:829873ExpressionAtlas:O23167Gene3D:3.40.50.1440GeneID:829873GO:GO:0003924
GO:GO:0005774GO:GO:0005829Gramene:AT4G37190.1hmmpanther:PTHR13391HOGENOM:HOG000244150InterPro:IPR003008InterPro:IPR013838
InterPro:IPR019605InterPro:IPR029209OMA:SEWSQMEPfam:PF10644Pfam:PF14881PhylomeDB:O23167PIR:D85439
PROSITE:PS00228Proteomes:UP000006548RefSeq:NP_195436.1scanprosite:PS00228STRING:3702.AT4G37190.1SUPFAM:SSF52490TAIR:AT4G37190
UniGene:At.31265UniGene:At.48077UniProt:O23167
Coordinates (TAIR10) chr4:+:17507155..17509512
Molecular Weight (calculated) 62207.20 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.31
Length 562 amino acids
Sequence (TAIR10)
(BLAST)
001: MREIVTIQVG EFANFVGSHF WNFQDELLGL ASDPESDPIF RNHNLDMDVL YRSGETQQGV ATYTPRLVSV NLKGALGTMS SRGTLYNEGS SSRSDSSATW
101: FGDVDTQRSE PRKRNLFLQS LYEEEHVVGK EKAKEIEDKD IVGCLDEEVE CWTDFSKSHY HPQSLYELNG LWMDSQAFNN YGIGKDVFSE ASRGEEICDR
201: LRFFVEECDH IQGIKFLVDD SGGFSAVAAD FLENMADEYT NVPVLLYSVR TPMSQMSSKK TVSNKLHDAI SFSRLSSFCK LFTPIGLPSL TGSKASKFLN
301: LGDEKPYRSS AVYAAALHSS TIPFRMQPTS SDSSEVSNSM DVNTLVQLLT GRGRQNIVAI LDSAMPAPTL AGKQLENTLL TSLQALTPEV TEDVEDNQAV
401: ESMCILGALR SEDKEALVSE VKNAVDASYE QATTKGKPLF CNLSVSRCPL PVPLPFPSIF GNLVGRKGEI LSSPVSDSLY RGSLDVHSIP VATRWRSSSA
501: ILPFLETRMG NLEKLGIQWG AMGSDVVRAW GFGREELQEM RENLSKMVSE LNPQFFESSD SD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)