AT4G32730.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative c-myb-like transcription factor with three MYB repeats. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PC-MYB1; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15791039..15795643 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110377.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||
| Length | 995 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKREMKAPTT PLESLQGDLK GKQGRTSGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIID 101: LVEKYGPKKW STISQHLPGR IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW NSSVKKKLDS YYASGLLDQC 201: QSSPLIALQN KSIASSSSWM HSNGDEGSSR PGVDAEESEC SQASTVFSQS TNDLQDEVQR GNEEYYMPEF HSGTEQQISN AASHAEPYYP SFKDVKIVVP 301: EISCETECSK KFQNLNCSHE LRTTTATEDQ LPGVSNDAKQ DRGLELLTHN MDNGGKNQAL QQDFQSSVRL SDQPFLSNSD TDPEAQTLIT DEECCRVLFP 401: DNMKDSSTSS GEQGRNMVDP QNGKGSLCSQ AAETHAHETG KVPALPWHPS SSEGLAGHNC VPLLDSDLKD SLLPRNDSNA PIQGCRLFGA TELECKTDTN 501: DGFIDTYGHV TSHGNDDNGG FPEQQGLSYI PKDSLKLVPL NSFSSPSRVN KIYFPIDDKP AEKDKGALCY EPPRFPSADI PFFSCDLVPS NSDLRQEYSP 601: FGIRQLMISS MNCTTPLRLW DSPCHDRSPD VMLNDTAKSF SGAPSILKKR HRDLLSPVLD RRKDKKLKRA ATSSLANDFS RLDVMLDEGD DCMTSRPSES 701: PEDKNICASP SIARDNRNCA SARLYQEMIP IDEEPKETLE SGGVTSMQNE NGCNDGGASA KNDQETSGSF FELRLCSPGM TRARPDNKVN ASAKDLSNQH 801: KISLGDFPTE EMSSEPLCTV DSIPLSAIDK TNTAETSFDI ENFNIFDGTP FRKLLDTPSP WKSPLLFGSF LQSPKLPPEI TFEDIGCFMS PGERSYDAIG 901: LMKHLSEHSA TAYADALEVL GNDTPESILK KRQLNKSIQG KENQHQPHDQ LGNRSQVECR ALDFSDCGTP GKAKVPSASP GGYSSPSSYL LKSCR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)