AT4G32620.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Enhancer of polycomb-like transcription factor protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Enhancer of polycomb-like transcription factor protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT5G04670.1); Has 578 Blast hits to 531 proteins in 105 species: Archae - 0; Bacteria - 30; Metazoa - 78; Fungi - 45; Plants - 268; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:15731968..15737222 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 173442.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||
| Length | 1540 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MENRLGNSNG VGISKKSRSL DLKTLYKSSI SKDSVNKSFK RKHRSGIDGD QLKQDKKSRK VVSLSSFKKV GSQNESILDK ACNGTTILHN LEDSKEVGLD 0101: EKLCDSNGLQ VISVGLASST IYVPRRRRDF VGRSRFENGL AQKSAGESDS QEELVVNIPK VTAEESSVQD QPSKVEEKDS DKDIKESNSA APLQLENGHS 0201: NQSPVKDDQL VVVKQRNSNS RKRKSSASNR RVGKEAKSSG DASGRISKVS REDDEENLEA NAAIMLSSRF DPNCTQFPSN SVTPGSPSAS RLHPLPSGKN 0301: SVDPRSELLS SKCVSDDTDD RMLRPRRHND DGKGKVRKRR HFYEILFSDV DSHWLLNKKI KVFWPLDERW YHGFVDGFDG DKNLHHVKYD DRDEEWINLQ 0401: GERFKILLFP SEVPGKNQRK RRCSESKSTQ KVKGNDTSSK DEEKQKEKLE DDSCMESEPI ITWLARSRHR DKSSTLKAVQ KRKKTDVMTS NESVKMNGDV 0501: TDRSASSLAS CGLPGPSKNE LESSGFRNGS IFPIVYCRRR LHTAKKDIYK ESGYNSVEFL KQFLVSKSPD PGVEFLPIED SGDLELCCPW NESEQFELSL 0601: SLQGVSLMSY FLMADVDWLS RAALLLRHGT LVTLWPRVRL EMIFLNNQDG LRYLIFEGCL MEVVQLIFRI LMVVDHSNKQ GAQGADADLQ LPVFSIGLQV 0701: SCIPGFQRQL GFQIYSFHEV KHSKWSYLEQ NVRRHSLLVK QVSIAECTHN NMKVLQKVMQ KRSRHGISSG LVSRGSSSAE AWPTSVCYKK QNTSPFALLF 0801: TARPPTLLLS LHLNMIRELG HDSADFLGIE RDLVTHRGCD MADFTNEHSE LSLKSKSQTD EPIITSSRAQ ESKDLHTPSQ SQQLGSDSEN WMSYSSSVVR 0901: HKHETRSNVS VNGISIQVPI SDDCEDGTPQ SSNLALNIQG SSNSSPKATA PRSMWNRSKS SLNGHLSHGW SDSKGDFLNT NLANGPKKRR TQVSYSLPSG 1001: GSDSRNKGSL LKGMPNKRIR RSTADVTKGI QKDLESSLCD ANVLVTLGDR GWREYGAQIF LEPFDNNEWR LAVKISGTTK YSHRAHQFLQ PGSVNRFTHA 1101: MMWKGGKDWT LEFPDRGQWF LFKEMHEECY NRNTRAALVR NIPIPGIRMI ERDNFDGTET EFIRSSSKYF RQTETDVEMA LDPSRVMYDM DSDDEQCLLR 1201: IRECSSAENS GSCEITEDMF EKAMDMFEKA SFVKQRDNFT LIEIQELTAG VGSLEAMETI YELWRTKRQR KGMPLIRHLQ PPLWEKYQRE LKDWELVMSK 1301: ANTPNSCGSQ KKQSPTEKPA MFAFCFKPRG LEVKHRGTKH RSQKKLSVYA QHSSALGDYD GCNSSAGRRP VGFVSGDERF LYSNQSYEHS NEFSVHPGTY 1401: SPRDLGMGYF SSGGNGYHRN HQNKSQRING KRNTSERWDA GYSECPSSNL VCYSNGSQRP DVEGIRNSTD IDEYKLRDAA GAARRACALA KLKRERAESL 1501: RYKADLAIQK AAAALMCAEA VKASSEDLGN NNGVESSSEG |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)